Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3646g00008 ATGGATATTTCATCTGTGACAACGTTGCCTGAACAGCAGGTAATAGTGGAGGATCCTACCTTTCTTCATCAATGGCACTTGAACTCTCTGGATGATCCAAGCTTACTGCCCCTTGATGCTGCTTTTGGAGAGACCTTAGAACAACATTCATTCTCTAACCCAACAAGGTTCAACCCCAAAACTTCCATGGCAGATACCCTTTCTGGCATTGAAAGGCCCCAGAAACACCTGAAACCCAACAATTGGAGCCCCAACACTAGTGATCAGAATCAGATATTAGACACAGACTATGATTCTTGTTCCAATCTTCTTTCCTTTGTCAATTCAAGTTACATAAGTCAATTGGGGACATTAAAGCCTAAGGTGCAGATACCATGTCCTGAAATCAACGGCACAATCCTTTCAGACATGTTGGCCTCTCATGGATCCTTGGGAAATCAGAACTTTGTCTTCAATGCCAGCCAAGATGCCAGAAAGAATGTTGGAACAAGTCCTAAACTTTCTCAACCTCAAGACCACATTATTGCTGAAAGAAAGCGGCGAGAAAAGCTCAGCCAGCGCTTCATTGCTCTATCTGCTCTTGTCCCCGGCCTTAAAAAGACGGACAAGGCTTCTGTTCTTGGGGATGCTATAAAGTACTTGAAGCAATTGCAAGAGAGAGTGAGGGTCCTTGAAGAGGAACAGAGCAGAAGGAGGAGCGTGGAATCTGTGGTGGTTGTGAAGAAAACTCAATTATTAGCTGATGAAGGAGATTGTTCTTCGGACTCTGGTGATCCGCGTGAGGAGCCATTACCAGAAATTGAAGCTAGATTTTGTGATAGAAACGTCCTCATAAGAGTTCACTGTGAGAAAACAACAGGAGTGATAGAAAAAACAGTCAGTGAGATAGAGAAACTTCATCTGACAGTCACAAGTACCAGTGTCATGACGTTTGGCAGTTCTGCTCTTGATATTACCATAATTGCTCAGATGGATAAGGAATTTTGCATGAAGTTGAAGGAGCTTCTAAGCAGCCTACGCTCAGCCTTTGAATCTTTCATGTGA 1044 0.4339 MDISSVTTLPEQQVIVEDPTFLHQWHLNSLDDPSLLPLDAAFGETLEQHSFSNPTRFNPKTSMADTLSGIERPQKHLKPNNWSPNTSDQNQILDTDYDSCSNLLSFVNSSYISQLGTLKPKVQIPCPEINGTILSDMLASHGSLGNQNFVFNASQDARKNVGTSPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKTDKASVLGDAIKYLKQLQERVRVLEEEQSRRRSVESVVVVKKTQLLADEGDCSSDSGDPREEPLPEIEARFCDRNVLIRVHCEKTTGVIEKTVSEIEKLHLTVTSTSVMTFGSSALDITIIAQMDKEFCMKLKELLSSLRSAFESFM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3646g00008 347 CDD bHLH_AtNAI1_like 171 242 - -
Pral3646g00008 347 Gene3D - 163 233 IPR036638 GO:0046983
Pral3646g00008 347 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Pral3646g00008 347 PANTHER BHLH TRANSCRIPTION FACTOR 38 343 - -
Pral3646g00008 347 SMART finulus 174 223 IPR011598 GO:0046983
Pral3646g00008 347 Coils Coil 207 227 - -
Pral3646g00008 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Pral3646g00008 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 231 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3646g00008 Pral-Chr3646 38990 40929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3646g00008 168 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.284 2.81e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3646g00008 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3646g00008 - - gmx:100798018 398.282