Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3646g00007 ATGGATATTTCATCTGTGACAACGTTGCCTGAACAGGTAATAGTGGAGGATCCTACCTTTCTTCATCAATGGCACTTGAACTCTCTGGATGATCCAAGCTTACTGCCCCTTGATGCTGCTTTTGGAGAGACCTTAGAACAACATTCATTCTCTAACCCAACAAGGTTCAACCCCAAAACTTCCATGGCAGATACCCTTTCTGGCATTGAAAGGCCCCAGAAACACCTGAAACCCAACAATTGGAGCCCCAACACTAGTGATCAGAATCAGATATTAGACACAGACTATGATTCTTGTTCCAATCTTCTTTCCTTTGTCAATTCAAGTTACATAAGTCAATTGGGGACATTAAAGCCTAAGGTGCAGATACCATGTCCTGAAATCAACGGCACAATCCTTTCAGACATGTTGGCCTCTCATGGATCCTTGGGAAATCAGAACTTTGTCTTCAATGCCAGCCAAGATGCCAGAAAGAATGTTGGAACAAGTCCTAAACTTTCTCAACCTCAAGACCACATTATTGCTGAAAGAAAGCGGCGAGAAAAGCTCAGCCAGCGCTTCATTGCTCTATCTGCTCTTGTCCCCGGCCTTAAAAAGACGGACAAGGCTTCTGTTCTTGGGGATGCTATAAAGTACTTGAAGCAATTGCAAGAGAGAGTGAGGGTCCTTGAAGAGGAACAGAGCAGAAGGAGGAGCGTGGAATCTGTGGTGGTTGTGAAGAAAACTCAATTATTAGCTGATGAAGGAGATTGTTCTTCGGACTCTGGTGATCCGCGTGAGGAGCCATTACCAGAAATTGAAGCTAGATTTTGTGATAGAAACGTCCTCATAAGAGTTCACTGTGAGAAAACAACAGGAGTGATAGAAAAAACAGTCAGTGAGATAGAGAAACTTCATCTGACAGTCACAAGTACCAGTGTCATGACGTTTGGCAGTTCTGCTCTTGATATTACCATAATTGCTCAGATGGATAAGGAATTTTGCATGAAGTTGAAGGAGCTTCTAAGCAGCCTACGCTCAGCCTTTGAATCTTTCATGTGA 1041 0.4332 MDISSVTTLPEQVIVEDPTFLHQWHLNSLDDPSLLPLDAAFGETLEQHSFSNPTRFNPKTSMADTLSGIERPQKHLKPNNWSPNTSDQNQILDTDYDSCSNLLSFVNSSYISQLGTLKPKVQIPCPEINGTILSDMLASHGSLGNQNFVFNASQDARKNVGTSPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKTDKASVLGDAIKYLKQLQERVRVLEEEQSRRRSVESVVVVKKTQLLADEGDCSSDSGDPREEPLPEIEARFCDRNVLIRVHCEKTTGVIEKTVSEIEKLHLTVTSTSVMTFGSSALDITIIAQMDKEFCMKLKELLSSLRSAFESFM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3646g00007 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 230 IPR036638 GO:0046983
Pral3646g00007 346 PANTHER BHLH TRANSCRIPTION FACTOR 38 342 - -
Pral3646g00007 346 Coils Coil 206 226 - -
Pral3646g00007 346 Gene3D - 162 232 IPR036638 GO:0046983
Pral3646g00007 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Pral3646g00007 346 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Pral3646g00007 346 CDD bHLH_AtNAI1_like 170 241 - -
Pral3646g00007 346 SMART finulus 173 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3646g00007 Pral-Chr3646 38990 40929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3646g00007 167 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.284 2.79e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3646g00007 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3646g00007 - - gmx:100798018 402.519