Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3643g00045 ATGCATCACAAAAGCTTGACTCCCGACATTGTCACCTGTGGTTCCCGTGTCAATGGTTTGTTCAAGTCAGGTAGAATCTCTAGTGTGCAAGATCTTATTTATGAGATGCATGCTAGTGGCCTTGCTCCAAATATGATATTGTGCAATATCTTATTGGATGGATTGTGCAAAAATCAACTTCTTCACCAGGCAGTTACATTATTTAAGCAAATTGTTAACCTAAGAATTCGGCCTGATACTTACACATATACCATGCTAATTGATGGTTTGTGTGTGGGGAATAGGTTAAATGATGCACGACAGATTTTCCAGCATCTTTTTGTAAATGGCCATCCTTTGGATGTGCAAACATATAATGCTATGATCAAAGGGCTTTGTAAAGAGGGTTTGTATGATGACGCAAAGGCCTTGCTCTATCGAATGAAAGAGAAAGGATGCCTTCCTAATGGTGTAGCTTTTGAAACACTCATTATACGTCTTTTGGAAAAAGGTGAGAACGATGAGGCAAAGAATTATGTTGACGAATTATTCATCAAACCTACTTTAGCACGAGAACTTATAGGTGCAAAATTTGCTTGTTCCAGGTATGGAACAAAAAGAGAGCACAACAAATTATTCAATGGACCATGTGCCCAACAGGACAAGCAAGTTGCTGAAAATTCAACTGGTGGAAGATCTTGTTCAAAGACTGATTGCAAAGCAAGCATGCGTGTAAAAAGATGGCTTGATGAAAAATGGGTAATACATAGTTTTGTGAAGGAGCATGATCCTGAGCTTTTACCAGCTCAAGCTGTCAGTGAGCAAACAAGAAAAATGTATGCGGCAATGGCTAGGCAGTTTGCTGAATACAAAACTGTGGTTGGTCTCAAGAGTGAGAAAGTTCCATTTGACAAAAGCTGGAATTTGGGCTTTGAGTCAGGGGATGACAAGTTCCTACTTGAGTTTTTTGGTGCAGATGCATAG 963 0.3956 MHHKSLTPDIVTCGSRVNGLFKSGRISSVQDLIYEMHASGLAPNMILCNILLDGLCKNQLLHQAVTLFKQIVNLRIRPDTYTYTMLIDGLCVGNRLNDARQIFQHLFVNGHPLDVQTYNAMIKGLCKEGLYDDAKALLYRMKEKGCLPNGVAFETLIIRLLEKGENDEAKNYVDELFIKPTLARELIGAKFACSRYGTKREHNKLFNGPCAQQDKQVAENSTGGRSCSKTDCKASMRVKRWLDEKWVIHSFVKEHDPELLPAQAVSEQTRKMYAAMARQFAEYKTVVGLKSEKVPFDKSWNLGFESGDDKFLLEFFGADA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3643g00045 320 Pfam PPR repeat family 114 157 IPR002885 -
Pral3643g00045 320 Pfam PPR repeat family 43 91 IPR002885 -
Pral3643g00045 320 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 1 176 - -
Pral3643g00045 320 Gene3D Tetratricopeptide repeat domain 63 242 IPR011990 GO:0005515
Pral3643g00045 320 Gene3D Tetratricopeptide repeat domain 1 62 IPR011990 GO:0005515
Pral3643g00045 320 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Pral3643g00045 320 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Pral3643g00045 320 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Pral3643g00045 320 NCBIfam pentatricopeptide repeat 117 149 IPR002885 -
Pral3643g00045 320 NCBIfam pentatricopeptide repeat 47 80 IPR002885 -
Pral3643g00045 320 NCBIfam pentatricopeptide repeat 81 114 IPR002885 -
Pral3643g00045 320 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Pral3643g00045 320 Pfam FAR1 DNA-binding domain 185 260 IPR004330 -
Pral3643g00045 320 Pfam PPR repeat 11 41 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3643g00045 Pral-Chr3643 351040 352374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3643g00045 1 232 Glycosyltransferase AT1G05670 28.085 4.61e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pral3643g00045 FAR1 4e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3643g00045 - - gmx:100817034 208.764