Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3643g00030 ATGAAGGGCCTTTGCATCAATAATGACGTTGGGAGGGCATTAGATTTTCATGATGATCTGACCGCAAAAGGTTTCCAGTTAAATGTTGTTAGCTACAACACAATGATGAATGGACTGTGCAAGACTGGAAAAACAAGGGCTGCAGTTAAATTACTCCAAAACATGGGGAGAGGGCCCGTTAAGCCTAATTTAGTTTCTTATAATACAATTATTGATGGCTTTTGCAGAGAAAGGCTCATAGCTGAAGCCTATGATTTATTTCATGAAATGATTGATCATGGAATATCTCCTAATGTTGTGACCTACAGCTCTCTCATACAAGGTTTTTGTGTCGTGGATAAATGGCCAGAAGCTGCAAGATTGTTTAATCAAATGAGACTTGAAGGCATCAATGCTGATGTGTGTACTTTTAGTATATTGGTCGATGCATTTTGTAAGAAAGGAAGTATGACTAAAGCTGAGGCTATCGTTGCCATGATGTTGAAGAGCCGCAAAAGTCCTGATGTTGTAACTTATAACACTTTAATGAATGGGTACTGTTTGATTAATAATGTTAGAGAGTCAAAAAAACTATTCAACAAGATGGTCAAGAGTGGTTTGACTCCTAGTATTATTAGTTATAACATTTTGATTAATGGACTTTGTAAAATCAAGATGGTGGATGAGGCCATGAATCTCTTTAAAGAATTGCGTTGCAAATGCTTTATTCCTGACATATTCACTTACAACTCCCTTGTCGACGGTTTGTTCAAGACAAGTAGAATCTCTGATGTGCAAGATATTATCCATGAGATGCATGATAGAGGTTGTGCCCCAAATATAGTATTTTATAGTACCTTATTAGATGGATTGTGCAAAAGTCACCATCTTGACCAGGCAATTTCATTATTCAAGCAAATTGTTAACCTAGGAATTCAGCCTGATACTTACACATATACCATACTTATTGATGGTTTGTGCGAGGGTAACAGATTAAACGATGCACGGCAGATTTTCCAACATCTTTTGGTTAATGGTCATCCTTTGAATGTCCAAGCATACAATGCTATGATCAAAGGACTTTGTAAGGAGCATTTGTATGATGAAGCAAAGGCTTTGCTTTATAAAATGCAAGAGAATGGGTGCTCGCCTGATTTTGTAACTTTTGAAACAATTATTATACCTCTTTTGGAAAAAGGTGAGAATGATGAGGCAAAGAATCTGATTGACGAATTGTTCATCAAGACCAAGCAAGATGCTGAAAGTTCAACCGGTCGAAGATCTCGTTCAAAGACTGATTGCAAGGCAAGCTTGCATGTAAAAAGAATGCCTGATGGAAAATGGGTAGTTCACAGTTTTGTGAAGGGGCATAATCATGAGCTTTTTCCGGCTCAAGCTAAAACTAGCAATGCCTATATGAACTTTTGTGATGTGGTTTCTTCTGATATAATCCATGTTACGAACAAATATAAAGCTCCTTCACGGTATGTCTTCTGCCGATTTCCTTCGTTTTCTTCCGCGTCTACGTCTACCTTCCTTATTTCTACTTCATATGCCTTAAGCCTCCGCCTCTGTTTACATTCTACAACTCTTCAGAATATTGAAGAGGCTATCTCTGCTTTTAATCGCCTGCTTCATATTCGCACCCCACCCTCTATATTCCAAATTACTAAGATCTTAGGATATGTTGCGAGGTTGAAACAATATCCTACAGCTGTCTCCCTTTTTGCACAAGCGGAATCTAAGGGATTCACGCCATGTTTGGTTACGCTGAACATCTTGATTAATTGTTACTGCCATTTGGGTCAAATGACTTCTGCTTTCTCTGCCTTAGGCAAGATTCTTAAGATGGGCTGTCAGCCAGATACGATTTCTTTGAACACACTGATGAAGGGCCTTTGCATCAATAATGACATTGGAAAGGCCCTAGATTTTCATGATGATTTGATAGCAAAGGGTTTTGAGTTAGGTGTAGTTAGCTATGGCACAATGATAAATGGACTATGTAAGGCCGGCAAAACGAGAGTTGCGGTTAAATTGCTCCAAAAGATGACGAGAGGGCCAGTTAAGCCTGATTTAGTGATGTATAGTATGATTATTGATGGATTTTGCAAGGAGGGACTGATAACTGAAGCCTATGATTTATTTTGTGAAATGATTGATCGTGGAATATCTCCTAATGTCGTGACCTACAACTCTCTCATGCATGGTTTTTGTGTCATGGATAAATGGCCGGAAGCAGTAACATTGTTTAATGAAATGAGACTTAAAGACATCAACCCTGATGTGTGTACTTTTAATATATTGGTCGATGCATTTTGTAAGAAAGGAAGTATGACTAAAGCTGAGGCTATCATTGCCACGATGATGAAGTGCAGTGAAAGACCTAATGATGTTACTTACAACACTTTAATGGATGGGTACTGTTTGATTAATAATGTTTTTGAGTCAAAAAGACTATTCAACAAGATGGTCAAAAGTGGTTTGGCTCCTTGTATTATTAGCTATAACATTTTGATTAATGGACTCTGTAAAATGAAGATGGTTGATGAGGCCATGAATCTCTCTAAAGAAATGTGTCGTAAAAGCCTTATTCCCGACATTGTCACTTACAGCTCCCTTGTTGACGGTTTGTTCAAGTCAGGTAGAATCTCTGATGTGCAAGATATTATTTATGAGATGCATGATAGAGGTTGTGCCCCAAATATAGTATTTTATAGTACCTTGTTGGACGGATTGTGCAAAAGTCACCAGCTTGACCATGCAATTTCATTATTCGGGCAAATTGTTAACCAAGGGATTCGACCTAATACTTACACATATACCATACTTATTGATGGTTTGTGCGAGGGTAACAGATTAAACGATGCATGGCAGATTTTCCAACATCTTTTGGTTAATGGTCATCCTTTGGATGTGCCAGCATATAATGCTATGATCAAAGGACTTTGTAACGAGCATTTGTATGATGAGGCAAAGGCTTTGCTTTATAAAATGCAAGAGAATGGGTGCTCGCCTGATCTTGTAACTTTTGAAACAATTATTATACCTCTTTTGGAAAAAGGTGAAAATGATGAGGCAAAGAATCTGATTGATGAATTGTTCATCAAGGTCTCTTGA 3099 0.3792 MKGLCINNDVGRALDFHDDLTAKGFQLNVVSYNTMMNGLCKTGKTRAAVKLLQNMGRGPVKPNLVSYNTIIDGFCRERLIAEAYDLFHEMIDHGISPNVVTYSSLIQGFCVVDKWPEAARLFNQMRLEGINADVCTFSILVDAFCKKGSMTKAEAIVAMMLKSRKSPDVVTYNTLMNGYCLINNVRESKKLFNKMVKSGLTPSIISYNILINGLCKIKMVDEAMNLFKELRCKCFIPDIFTYNSLVDGLFKTSRISDVQDIIHEMHDRGCAPNIVFYSTLLDGLCKSHHLDQAISLFKQIVNLGIQPDTYTYTILIDGLCEGNRLNDARQIFQHLLVNGHPLNVQAYNAMIKGLCKEHLYDEAKALLYKMQENGCSPDFVTFETIIIPLLEKGENDEAKNLIDELFIKTKQDAESSTGRRSRSKTDCKASLHVKRMPDGKWVVHSFVKGHNHELFPAQAKTSNAYMNFCDVVSSDIIHVTNKYKAPSRYVFCRFPSFSSASTSTFLISTSYALSLRLCLHSTTLQNIEEAISAFNRLLHIRTPPSIFQITKILGYVARLKQYPTAVSLFAQAESKGFTPCLVTLNILINCYCHLGQMTSAFSALGKILKMGCQPDTISLNTLMKGLCINNDIGKALDFHDDLIAKGFELGVVSYGTMINGLCKAGKTRVAVKLLQKMTRGPVKPDLVMYSMIIDGFCKEGLITEAYDLFCEMIDRGISPNVVTYNSLMHGFCVMDKWPEAVTLFNEMRLKDINPDVCTFNILVDAFCKKGSMTKAEAIIATMMKCSERPNDVTYNTLMDGYCLINNVFESKRLFNKMVKSGLAPCIISYNILINGLCKMKMVDEAMNLSKEMCRKSLIPDIVTYSSLVDGLFKSGRISDVQDIIYEMHDRGCAPNIVFYSTLLDGLCKSHQLDHAISLFGQIVNQGIRPNTYTYTILIDGLCEGNRLNDAWQIFQHLLVNGHPLDVPAYNAMIKGLCNEHLYDEAKALLYKMQENGCSPDLVTFETIIIPLLEKGENDEAKNLIDELFIKVS 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 28 62 IPR002885 -
Pral3643g00030 1032 Gene3D Tetratricopeptide repeat domain 646 711 IPR011990 GO:0005515
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 860 894 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 895 929 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Pral3643g00030 1032 Gene3D Tetratricopeptide repeat domain 116 217 IPR011990 GO:0005515
Pral3643g00030 1032 Gene3D Tetratricopeptide repeat domain 809 910 IPR011990 GO:0005515
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 755 789 IPR002885 -
Pral3643g00030 1032 Pfam FAR1 DNA-binding domain 408 456 IPR004330 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 965 999 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat family 167 216 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat family 965 1008 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat family 62 110 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat family 343 386 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat family 684 732 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat family 894 942 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat family 754 802 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat family 824 873 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat family 579 627 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat family 272 320 IPR002885 -
Pral3643g00030 1032 SUPERFAMILY HCP-like 516 677 - -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 685 719 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 205 238 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 30 63 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 100 133 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 170 203 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 277 309 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 582 616 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 310 343 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 346 378 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 932 965 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 687 721 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 827 861 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 862 896 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 240 274 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 757 790 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 652 685 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 968 1000 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 722 756 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 135 169 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 792 824 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 899 931 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 618 649 IPR002885 -
Pral3643g00030 1032 NCBIfam pentatricopeptide repeat 65 99 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 720 754 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 615 649 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 650 684 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 930 964 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 790 824 IPR002885 -
Pral3643g00030 1032 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Pral3643g00030 1032 Gene3D Tetratricopeptide repeat domain 218 463 IPR011990 GO:0005515
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Pral3643g00030 1032 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 58 275 - -
Pral3643g00030 1032 Gene3D Tetratricopeptide repeat domain 494 645 IPR011990 GO:0005515
Pral3643g00030 1032 Gene3D Tetratricopeptide repeat domain 911 1031 IPR011990 GO:0005515
Pral3643g00030 1032 Gene3D Tetratricopeptide repeat domain 712 808 IPR011990 GO:0005515
Pral3643g00030 1032 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 825 859 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat 129 160 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat 23 55 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat 645 678 IPR002885 -
Pral3643g00030 1032 Pfam PPR repeat 240 270 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3643g00030 Pral-Chr3643 262311 269186 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3643g00030 527 924 Glycosyltransferase AT1G05670 27.638 1.88e-53 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pral3643g00030 PPR_2 6.4e-15 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3643g00030 - - vum:124819894 953.355