Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3643g00028 ATGGACATAGATCTCAGGTTACCTTCTGGTGGCCACGATAAGGATGAAGAACAAAATACAATTGCTGACATATTGGAAGATGAAGAAAAATTGCATACCGGTGATCTAGAAGGCCAGAATATGGTTGGTGCCAGTGTTGATGCGCATGCTCTAGATAGTGGAGATTTGAATTCATCTACAATGGATATGGCAATGTTTAAGGAAGAGACAAATCTTGAGCCCCTTTCTGGCATGGAATTTGAGTCTCATGGGGAAGCTTATTCTTTTTACCAAGAATATGCAAGGTCAATGGGATTCAACACTGCAATACAAAATAGTCGACGTTCAAAAACTTCAAGAGAATTTATAGATGCAAAATTTGCTTGTTCCAGGTATGGAACAAAAAGAGAGCATGACAAATCATTCAATCGAGCCTGTGCCCGACAGAACAAGCAAGATGCTGAAAATTCAACTGGTCGAAGATCTTGTTCCAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGCCTGATGGAAAATGGGTAATACATAGTTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCACAAGCTGTCAGTGAGCAAACAAGAAAAATGTATGCTGCAATGGCTAGACAGTTTGCTGAATACAAAACTGTGGTTGGTCTTAAGAATGAGAAAAGTCCATTTGACAAAGGCCGGAATTTGGGCTTGGAGTCAGGGGATGCAAAGCTTCTACTTGATTTTCTGGTGCAGATGCACAGTATGAATTCAAACTTCTTTTACGCGGTAGATATAGGTGAGGATCAACGTCTGAAAAATGTTTTATGGATTGATGCTAAAAGTAGGCATGACTATACGAACTTTTGTGATGTAGTTTCTTTTGACACCATCTATGTTAGAAACAAATACAAGCTACCTCTTGCGCTTTTTGTTGGAGTAAATCAGCACTATCAATTTATACTGCTTGGGTGTGCCTTAATATCAGATGAAAGTGTTGCTACTTATTCTTGGCTAATGCGGACGTGGCTGAAAGGAGTTGGTGGCCATGCTCCGAAAGTGATCATCTTTGACCATGACAAGGCATTAAAGTCAGTTATTTTAGATGTCTTCCCTAATGCTCGTCACTCCATGTGTCTATGGCATGTATTAGGGAAGGTGTCTGAAAATCTGGCAGGTGTAATTAAACAACATGAGAATTTTATGGCAAAATTTGAAAAATGCATCTATAGGTCATGGACAAGCGATGAGTTTGAGAAGAGGTGGTCAAAAATTGTTGATAGGTTTGGACTCCAAGAGGATGAATGCATGCAGTCATTGTATGAAGATCGCAAGTTCTGGGTGCCAACATTCATGAGGGATATTTTCTTAGGTGGTTTGTCCACCGTCCAGCGATCAGAAAGTGTGAATTCATTCTTTGATAAATATGTTCATAAGAAGACCTCTGTGCAAGATTTTGTCAAGCAGTATGAAGCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGGTGATTCTGAGACATGGAATAAAGCAGCAACATTAAAAACTCCTTCACCATTGGAGAAGAGTGTTGCAGGGAGTTACGCACATGCAGTGTTCAAGAAGATTCAAGTCGAGGTTATTGGTGCAGTTGCTTGTCATCCGAAAGCTGACAGTCAGAATGATGCAGGCATTACTTACAAGGTTCATGATATGGAAAAGAATCAAGACTTCATTGTTGTGTGGAATGAAATTAAATCTGAAGTGTCATGCATATGTCGGTTATTTGAATATAGAGGTTTTCTTTGTCGGCATGCATTGATTGTTCTTCAATATTCTGGCCTTTCGGTAATCCCATCCCAATATGTCTTGAAACGGTGGACAAGAGATGCTAAAGATAGACAAACAATGGGAGAAGAATCTGAACATGTACTAGCTAGGGTACAACGATACAATGATTTATGCCAGCAAGCAATGAAGTTGAGTGAAGAGGGATCTCTATCTCAAGACAGTTACAGTATTGCATTCCATGCGTTGCGTGAAGCATACAAAAGTTGTGTGACTGTGAACAATTCTAGCAAGAGTCCTGCCGAAGTTGTCATGTCAGCTAGTCACAGTCAGCTCTCTGCTGAAGAAGATACCCAGAGTAGAAATATGGGCAAGACAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGCTGAACTCGGATTCTGAAGTCATGACAGTTGGGGCACAAGATAACATGCAGCAAATGGACAAATTCAACGCAAGGGCAGTAACCCTTGATGGTTATTATGGCTCTCAACAGAGCGTTCAGGGAATGTTGAACTTGATGGGACCAACACGTGATAATTATTATGGGAATCAACAGACAATTCAGGGGCTGGGACAGTTAAGTTCCATACCAACAAGCCACGATGGTTACTATGGTGCTCATCAAAGCATGCCTGGTCTGGCACAGCTTGATTTTTTCCGGGCATCGACAAATTTCACTTATGGCATTCGGGATGATCCAAATGTAAGACCGACACAATTGCATGAGGACCCATCAAGACATGCATGA 2532 0.4052 MDIDLRLPSGGHDKDEEQNTIADILEDEEKLHTGDLEGQNMVGASVDAHALDSGDLNSSTMDMAMFKEETNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREHDKSFNRACARQNKQDAENSTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKTVVGLKNEKSPFDKGRNLGLESGDAKLLLDFLVQMHSMNSNFFYAVDIGEDQRLKNVLWIDAKSRHDYTNFCDVVSFDTIYVRNKYKLPLALFVGVNQHYQFILLGCALISDESVATYSWLMRTWLKGVGGHAPKVIIFDHDKALKSVILDVFPNARHSMCLWHVLGKVSENLAGVIKQHENFMAKFEKCIYRSWTSDEFEKRWSKIVDRFGLQEDECMQSLYEDRKFWVPTFMRDIFLGGLSTVQRSESVNSFFDKYVHKKTSVQDFVKQYEAILQDRYEEEAKGDSETWNKAATLKTPSPLEKSVAGSYAHAVFKKIQVEVIGAVACHPKADSQNDAGITYKVHDMEKNQDFIVVWNEIKSEVSCICRLFEYRGFLCRHALIVLQYSGLSVIPSQYVLKRWTRDAKDRQTMGEESEHVLARVQRYNDLCQQAMKLSEEGSLSQDSYSIAFHALREAYKSCVTVNNSSKSPAEVVMSASHSQLSAEEDTQSRNMGKTNKKKNPTKKKKLNSDSEVMTVGAQDNMQQMDKFNARAVTLDGYYGSQQSVQGMLNLMGPTRDNYYGNQQTIQGLGQLSSIPTSHDGYYGAHQSMPGLAQLDFFRASTNFTYGIRDDPNVRPTQLHEDPSRHA 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3643g00028 843 SMART 26again6 578 605 IPR006564 GO:0008270
Pral3643g00028 843 ProSiteProfiles Zinc finger SWIM-type profile. 556 603 IPR007527 GO:0008270
Pral3643g00028 843 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 61 676 IPR031052 GO:0006355
Pral3643g00028 843 Pfam FAR1 DNA-binding domain 88 190 IPR004330 -
Pral3643g00028 843 Pfam MULE transposase domain 287 379 IPR018289 -
Pral3643g00028 843 Pfam SWIM zinc finger 572 601 IPR007527 GO:0008270
Pral3643g00028 843 MobiDBLite consensus disorder prediction 687 705 - -
Pral3643g00028 843 MobiDBLite consensus disorder prediction 824 843 - -
Pral3643g00028 843 MobiDBLite consensus disorder prediction 687 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3643g00028 Pral-Chr3643 247737 254881 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pral3643g00028 FAR1 2.6e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3643g00028 - - gmx:100817034 1428.31