Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3630g00029 ATGGAACCAATCCAAAATAAGAAAGCTCGCAAGGCAACGTTTGAGGGTAGGAAAAAGAGCATAATGAAGAAAGCTTACGAGCTTTCTACTCTCTGTGGAGTTGAAGTCTGCATCATAATCTATGGCCCTAACAATAATGAAGGCCAAGTTCCCGCTCAGACATGGCCTCAAGATCCCCAAGACGTCATCAGAATCATCCACAAGTACAACAAGGCCAGGATCGCCAGCCGCCAGCCACCGAAGAAGTACGATCTGCAAGATTTCTTCAGAGATAGAAGGAACAAAGTTGAAGCTGAGAGAGCAAAAGTTGACAAAGAGACTCTCAGGAACTTGTCCTCTCACCAACAAAACTTGAATTCACCAAGAGATGATGAATTGAGAATGTTTGTGGCTGAGCTCGATGCTAGGATTGAGGAATGTGACAGAAGAATCAACATGTTGAAAATGATGAAACCAGATCATCATCAGAATAATAATAACCCCAGAATAACAAACCAAAACCTTTTTAATGTGTTTCCTCCTACTATGAAGTCTGCAATTTTTTACCCTTATTATTCTCCTGTATCTCAGAATATTCTTCATATGCAGATAAATAGTGGGCCAAGAAGAACCAATTTGAGAATGAGGGAAAAAGTTCCGTGA 642 0.4081 MEPIQNKKARKATFEGRKKSIMKKAYELSTLCGVEVCIIIYGPNNNEGQVPAQTWPQDPQDVIRIIHKYNKARIASRQPPKKYDLQDFFRDRRNKVEAERAKVDKETLRNLSSHQQNLNSPRDDELRMFVAELDARIEECDRRINMLKMMKPDHHQNNNNPRITNQNLFNVFPPTMKSAIFYPYYSPVSQNILHMQINSGPRRTNLRMREKVP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3630g00029 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 45 IPR002100 GO:0003677|GO:0046983
Pral3630g00029 213 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Pral3630g00029 213 ProSiteProfiles MADS-box domain profile. 1 45 IPR002100 GO:0003677|GO:0046983
Pral3630g00029 213 Coils Coil 130 150 - -
Pral3630g00029 213 CDD MADS_SRF_like 1 65 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pral3630g00029 213 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Pral3630g00029 213 Gene3D - 6 95 IPR036879 GO:0003677|GO:0046983
Pral3630g00029 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3630g00029 Pral-Chr3630 453611 454252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3630g00029 1 185 Type I MADS-box Gene Family AT5G58890 29.630 3.79e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral3630g00029 SRF-TF 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3630g00029 - - aip:107620908 159.458