Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3630g00002 ATGTCTGTGAATCGGAAGCTCCCTGGGTTAAATGGCAGGATGCCACCAAGTTCCAAGTCAGCTAAGTCAAATGAAGCTTTGCATGAGTCTAATTCTTCACTCAGGAAATGCAAGAAGAAGAAGCCCTTTTTCGTGTGGGGTTTGCTTGGTCTTGTTGCGGTGGGGATTGTGTGGTTCTTCATCAGTTTCCACAGTGACTCGTTCATGTTGAGGAAGGAGCAAAGGTTGGGTGATTGTGAAGAGAGAGCTCGAATCTTGCTACAGCGTCACAATATCAGCAAAAAGCAACTCCATGCTTTCGTTTCCTTCTTCTCTGTATCAGATCAGATTTTATCCCAATGTATCGATGAAAGAAGAGTGCAAAAGCTGTTAAGCAGTGACCTTGGCAATACCTTGCAGATGACATTTTCAGAGAATAAGGTGTTACATAGGGAGCATATATGTGGTCCAGGCCAAGTAGAACTTATGGAACAATGCCCAGTTCTCAATGATTCTGTGCAGAGAAATCTGGAATCATTACAGCTAGTGGAAAAAACTGTATCATTCGCTTCATACTCTGCTATCATGTCCAATTTGGGCAATAATTTGTTTCATGGCAAGAACATTGTGCAGTCATGGGTATTGGAGTTAGTTATCCAGGGTTATCTGGTATTGTGTATAGGATGCTGGGGGATTCTTCTTGTAATTACAATTTGTTGCAGATGGGCTGGGTTTCCTTTCCTTTGGAATCAGAAGCTGGTTTCACAGCCGAAACAGTTGCAACATTCTGCAGGGCAAAATCCAAAGGGTGCTGGGAGTTGGAGGAAAAAGCTTTTAGTTACATTTGTGTTACTTGGAATAGTTGTGTCCATTTGGTTATTCTGGCACCTGAGTAATGATATTAAGCTGAGGAGAGTAGAAATGCTTACTAATATGTGTGATGAGCGAGCTCGCATGCTGCAAGATCAGTTCAATGTGAGCATGAACCACGTTCATGCTCTGGCTATTCTTGTGTCCACCTTTCACCACAGTAAACACCCATCTTCTATTGACCAGAAAACATTTGGAGAATATACAGAGAGAACAGCATTTGAGAGACCACTCACCAGCGGTGTTGCTTATGCTCTGAAAGTTCTCCACTCTGATAGGGAGCATTTTGAAAAGCAGAATGGGTGGACGATTAAGAAAATGGAGACTGAGAATGAAACACTTGTCCAAGATTGTATTCCGGAAAATCTTGATCCTGCACCCATTCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACTGTTTCCCATATTGTATCTATCGATATGATGTCTGGAAAGGAAGACCGTGAGAATATCTTGCGAGCAAGAGCAACAGGAAAGGGAGTGCTAACGTCTCCTTTTAAACTACTGAAGTCCAATCACCTGGGTGTTGTCCTTACATTTGCTGTCTACAATGCTAATTTTCCTCCACACGCTACACCGAAGCAACGCATTGAAGCTACTGTTGGGTACTTGGGTGCTTCCTATGATGTTCCATCACTGGTGGACAAGCTCCTTCACCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGATACAACTAATGCTTCTGCACCTATCAAAATGTATGGTACTGATGTTGTTGATACTGGGTCACTACATATAAGCAACCTGGATTTTGGGGATCCTACACGAAAACATGAGATGCATTGCAGGTTCAAGCACAAGCCTCCACTACCTTGGACGGCAATCAATGCATCAGTTGGGGTACTTGTTATTACTTTGCTTCTTGGTCATATTTTTTATGCAGCAATCAGCCGAATAGCAAAAGTGGAGGATGACTATCGTGAAATGAGGGAGCTCATGGTTCGAGCTGAAGCTGCAGATGTAGCAAAATCTCAGTTTCTGGCAACAGTTTCACATGAGATTCGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGAACTAGATGATAGCCAGCTGGATTATGCTCAGACTGCTCACAAGAGTGGTAAAGATCTTATATCAGTGATAAACGAGGTTCTTGATCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGCTGTAGAACTTGATCCGCGTTCTATTCTAGATGAAGTCCTATCACTCTTCTCGGGAAAATCTAATGAAAAAGGAATTGAGTTGGCTGTTTATGTGTCCAAAGTGGTGCCAGAAGTTGTCATTGGTGATCCTAAACGATTCCGGCAAATAATAACTAATCTTGTTGGAAATTCACTCAAGTTCACTCATGTTAAAGGACATGTATTTGTATCGGTTCATCTGTCAAATGAAGTAAAGAGCCCGCTTGACACTATGGATGTTGTGCTGAGTCAAGGGTTCCAGGACATTTCAGACAAAACATATAATACATTGAGTGGATTTCCTGTTGTCAATAGATGGAAAAGCTGGGCAAATTTCAAAAGGCTAAGCAGTATGAATCTGATGGATGAGCCTGGAGTGATTCAGTTACTAGTGACGGTTGAGGATACAGGAATAGGGATTCCTTTGGATGCCCAAAACCGCATATTCACCCCTTTTATGCAAGCTGATAGTTCCACCTCACGAACATATGGTGGGACTGGAATAGGACTGAGTATTAGTAAACGTTTAGTCGACCTCATGAGAGGAGAAATCGGATTTGCAAGTGAACCTGGGATTGGCAGTACCTTTTCCTTTAGTGCAACTTTCAGGATGCCGAAAGCCTCATCTCTGGATACAAAGCAGCAGCAGTGCGATCCTTTTGTTTCAGAGTTTCAAGGATTGAGAGCACTTGTGGTGGATAGAAGAAAAATCCGTGCTGAAGTTGCAAGATATTATCTGCAGAGGATGGGGATGTCTGTGGATGTTGCTTATAGTGTTAACTCCGCATGCTCTTATCTATCTGGTTCTTCCAACAAGAGCATTTCTCAACAGTTGGAGATGATTCTGATAGAAAAGGATGTCTTGGATAAAGAAAGTAGTGAATTGTATGTTATCAAGCAGCACAGGCAGGATGACATCAAAAGAGACCCAAAATGTTTTCCCAAGATTTTCCTCTTGACCAACAAGCTTAGTCCTGATGAACGTGGTGAGCTAAAATCTGTTGGTGTTGTAGATGATATTCTAATGAAACCTCTTTGGTTTAGTGCTTTGATTCGCTCCTACAGAGAAGCCCTTGGAAGTGAGAAGAAGCAAATAATTAGAAAGAAAGAACCAAACCTTGGGAACTTGCTAAGACAGAGACATATTTTGGTGGTTGACGACAATGCAGTGAACAGAAAAGTAGCTGAAGGTTTGCTACGAAGATATGGGGCTAAAGTAACCTGTGTGGAGGGTGGCAAGGCTGCCTTAAAGATACTTAAGCCACCACATAGTTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAGATGGACGGATTTGAAGTGACCAGACAAATCCGCAGTCTGGAGAGAGAGTTAAATGAAAAAATTGCACATGGTGAAGGATCATCAGAGATGTTGGGCAATGTGGCTCATTGGCACATGCCGATATTGGCTATGACAGCTGATGTAACTCAAGCTTCAATCGAAAAGTGCAATATGTGTGGGATGGATGACTATGTGTCAAAGCCATTCGAAGTAGAACAGCTCTATGAGGCAGTGGCTCGTTGCTTTGGGTCTGGTTGCTGA 3672 0.4232 MSVNRKLPGLNGRMPPSSKSAKSNEALHESNSSLRKCKKKKPFFVWGLLGLVAVGIVWFFISFHSDSFMLRKEQRLGDCEERARILLQRHNISKKQLHAFVSFFSVSDQILSQCIDERRVQKLLSSDLGNTLQMTFSENKVLHREHICGPGQVELMEQCPVLNDSVQRNLESLQLVEKTVSFASYSAIMSNLGNNLFHGKNIVQSWVLELVIQGYLVLCIGCWGILLVITICCRWAGFPFLWNQKLVSQPKQLQHSAGQNPKGAGSWRKKLLVTFVLLGIVVSIWLFWHLSNDIKLRRVEMLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHSKHPSSIDQKTFGEYTERTAFERPLTSGVAYALKVLHSDREHFEKQNGWTIKKMETENETLVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARATGKGVLTSPFKLLKSNHLGVVLTFAVYNANFPPHATPKQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPIKMYGTDVVDTGSLHISNLDFGDPTRKHEMHCRFKHKPPLPWTAINASVGVLVITLLLGHIFYAAISRIAKVEDDYREMRELMVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDDSQLDYAQTAHKSGKDLISVINEVLDQAKIEAGKLELEAVELDPRSILDEVLSLFSGKSNEKGIELAVYVSKVVPEVVIGDPKRFRQIITNLVGNSLKFTHVKGHVFVSVHLSNEVKSPLDTMDVVLSQGFQDISDKTYNTLSGFPVVNRWKSWANFKRLSSMNLMDEPGVIQLLVTVEDTGIGIPLDAQNRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMRGEIGFASEPGIGSTFSFSATFRMPKASSLDTKQQQCDPFVSEFQGLRALVVDRRKIRAEVARYYLQRMGMSVDVAYSVNSACSYLSGSSNKSISQQLEMILIEKDVLDKESSELYVIKQHRQDDIKRDPKCFPKIFLLTNKLSPDERGELKSVGVVDDILMKPLWFSALIRSYREALGSEKKQIIRKKEPNLGNLLRQRHILVVDDNAVNRKVAEGLLRRYGAKVTCVEGGKAALKILKPPHSFDACFMDLQMPEMDGFEVTRQIRSLERELNEKIAHGEGSSEMLGNVAHWHMPILAMTADVTQASIEKCNMCGMDDYVSKPFEVEQLYEAVARCFGSGC 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3630g00002 1223 SMART HisKA_10 624 689 IPR003661 GO:0000155|GO:0007165
Pral3630g00002 1223 SUPERFAMILY CheY-like 924 1059 IPR011006 -
Pral3630g00002 1223 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 678 900 IPR036890 -
Pral3630g00002 1223 SMART HKATPase_4 736 905 IPR003594 -
Pral3630g00002 1223 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 609 690 IPR036097 GO:0000155|GO:0007165
Pral3630g00002 1223 Gene3D - 921 1063 - -
Pral3630g00002 1223 Pfam CHASE domain 342 536 IPR006189 -
Pral3630g00002 1223 FunFam Histidine kinase 4 596 687 - -
Pral3630g00002 1223 Coils Coil 601 621 - -
Pral3630g00002 1223 ProSiteProfiles Histidine kinase domain profile. 631 905 IPR005467 -
Pral3630g00002 1223 MobiDBLite consensus disorder prediction 1 33 - -
Pral3630g00002 1223 Pfam Response regulator receiver domain 1083 1215 IPR001789 GO:0000160
Pral3630g00002 1223 MobiDBLite consensus disorder prediction 16 30 - -
Pral3630g00002 1223 SMART CHASE_2 339 538 IPR006189 -
Pral3630g00002 1223 ProSiteProfiles CHASE domain profile. 339 563 IPR006189 -
Pral3630g00002 1223 ProSiteProfiles Response regulatory domain profile. 929 1059 IPR001789 GO:0000160
Pral3630g00002 1223 Pfam His Kinase A (phospho-acceptor) domain 624 689 IPR003661 GO:0000155|GO:0007165
Pral3630g00002 1223 FunFam Histidine kinase 4 343 570 - -
Pral3630g00002 1223 SUPERFAMILY CheY-like 1079 1219 IPR011006 -
Pral3630g00002 1223 SMART REC_2 1081 1215 IPR001789 GO:0000160
Pral3630g00002 1223 Gene3D - 688 908 IPR036890 -
Pral3630g00002 1223 Gene3D - 596 687 - -
Pral3630g00002 1223 CDD HATPase_EvgS-ArcB-TorS-like 741 903 - -
Pral3630g00002 1223 ProSiteProfiles Response regulatory domain profile. 1082 1219 IPR001789 GO:0000160
Pral3630g00002 1223 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 736 901 IPR003594 -
Pral3630g00002 1223 PANTHER TWO-COMPONENT HISTIDINE KINASE 281 1215 - -
Pral3630g00002 1223 CDD HisKA 624 685 IPR003661 GO:0000155|GO:0007165
Pral3630g00002 1223 Gene3D - 1064 1218 - -
Pral3630g00002 1223 CDD REC_hyHK_CKI1_RcsC-like 1083 1215 - -
Pral3630g00002 1223 Gene3D CHASE domain 343 570 IPR042240 -
Pral3630g00002 1223 PRINTS Bacterial sensor protein C-terminal signature 848 858 IPR004358 GO:0016310|GO:0016772
Pral3630g00002 1223 PRINTS Bacterial sensor protein C-terminal signature 865 883 IPR004358 GO:0016310|GO:0016772
Pral3630g00002 1223 PRINTS Bacterial sensor protein C-terminal signature 889 902 IPR004358 GO:0016310|GO:0016772
Pral3630g00002 1223 PRINTS Bacterial sensor protein C-terminal signature 830 844 IPR004358 GO:0016310|GO:0016772
Pral3630g00002 1223 Gene3D - 290 342 - -
Pral3630g00002 1223 Gene3D - 64 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3630g00002 Pral-Chr3630 22478 33251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3630g00002 40 171 Miscellaneous Gene Families AT5G35750 26.056 1.46e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral3630g00002 CHASE 1.1e-34 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3630g00002 K14489 - gmx:100805107 1695.25