Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3620g00070 ATGGCTCGTGGTAAGATCCAGATCAAGAGGATTGAGAACACCACCAATCGTCAGGTCACCTACTCCAAAAGACGAAACGGTCTCTTCAAGAAGGCCAATGAGCTCACCGTTCTCTGCGACGCCAAGGTTTCCATTATTATGTTCTCCAGCAGCACCGGCAAACTCCATGAGTACATTAGCCCCTCCATCTCAACAAAGGAGTTCTTCGATCAGTACCAGAAGACCGTAGGGATTGATCTATGGAGCTCCCACTATGAGAATATGTTAGAGAACTTGAAGAAGCTGAAAGAGGTGAACAAGAATCTTCGTAGGGAGATTAGGCAGAGGATGGGGGACTGCTTGGATGGTCTGAACATGGACGACCTGAACCTACTTGAGCAGGAAATGGAACAGGCCACCAAGGTCATTCGTGAGCGAAAGTACAAGTCGCTTGGTAATCAGATCGACACTCAAAGGAAGAAGTTCAATAACGAGAGAGAAGTCAACGGCAGACTCATACGTGACTTTGAGGCAATAAGAGCAGAAGATCCACGTTTTGGATTAATAGAAAATCCAGTGGAGTATGATGCTGTGATGGGATTCTCCAATATAGGTCCTCGCATGTTTGCATTGAGCCTTCAGCCTAGTCATCCTAATCCTCATTCCGGAGCGCCAGCCTCAGATCTCACCACTTATCCTTTGCTCTTCTAG 690 0.4696 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSSTGKLHEYISPSISTKEFFDQYQKTVGIDLWSSHYENMLENLKKLKEVNKNLRREIRQRMGDCLDGLNMDDLNLLEQEMEQATKVIRERKYKSLGNQIDTQRKKFNNEREVNGRLIRDFEAIRAEDPRFGLIENPVEYDAVMGFSNIGPRMFALSLQPSHPNPHSGAPASDLTTYPLLF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3620g00070 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Pral3620g00070 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 58 IPR002100 GO:0003677|GO:0046983
Pral3620g00070 229 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Pral3620g00070 229 CDD MADS_MEF2_like 2 81 IPR033896 GO:0000977|GO:0045944
Pral3620g00070 229 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3620g00070 229 ProSiteProfiles MADS-box domain profile. 1 62 IPR002100 GO:0003677|GO:0046983
Pral3620g00070 229 Coils Coil 122 142 - -
Pral3620g00070 229 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pral3620g00070 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral3620g00070 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3620g00070 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3620g00070 229 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pral3620g00070 229 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3620g00070 229 Coils Coil 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3620g00070 Pral-Chr3620 363122 365874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3620g00070 1 228 MADS-box Gene Family AT3G54340 57.511 8.05e-91 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3620g00070 K-box 3.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3620g00070 K09264 - gmx:547720 350.132