Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3620g00048 ATGGAATCTACCAATCTCCATCACCTTCATCAAGACCATTCTCATCCTCCTCAGACTTCTTCTTCTTCTTCTTCTTTATCCGCCCCTTCTCTCTTTGGCCTCCCAACCTCCCATTCCTGGACACCAAATGTCGCTCTGAATGCTGGTAACTTGAACCCAAATTTCCAAGAGTCAAATCCCAGATCAAGAGCTTTCGCGCACAAGAAAGACATTGGAACCTATCGTCTTCTGAACGATTCAGGATTAGGTTATCAGTGGGCAAGTGCGGAAGAAAGGGAAGTGAGCAGTACTCAGTCGGATCACGACTTGGGCCTTCAGTATTCAAACATAAAGGAAGAGATCTCAGATGTTTTTCCCTGTAAATTCACTGAAATGCTAAACAGTACTGGTTCTAGTATGGAGCACAAAGATTTCAATGCTCTTAGTGAGAAGCTTTTGCTCAAGACCCTCTCTTCCGGAGACTTCTATTCCACTTCTGAAAATTTTGCTAATAATTTTGGTGGTGGTATGGGTATGGGAGTAGCGCCTAGTAGAAGGAGCTTTAGTCAGATTTACCCAAGCATTAATATTTCGAACTTAAACCATTCTTCCCCAGCTATTTCAAGCTCTTTGGATATGAACATGCAGAGCTCAGATCTATTGAACTCTGCAAGATTTAATGGCGGTTTGAGCCAACATACCCAAGACGGTTTAGCCAGATTCGACAACGTTTCTTTTCGTCTTGATCATATGCATCAGCACCAAATCGACAGGTCTTCATGCAACTCCAGTAATATTCCATCACACTTCACTAATGGCATGGCAGAAACGAAGAGGCCCAACACAACTTTGGTGGAGTCAAAGGCTTCTCAATCTCAAAATGTGCCAAAAAAATCACGATTGGAATCGCGCTCATCATGCCCACCCTTTAAGGTTAGGAAAGAGAAACTAGGAGATAGGATTGCGGCTCTTCAACAGTTGGTGGCTCCTTTTGGCAAGACAGACACAGCATCCGTACTCATGGAGGCTATTGGATACATCAAATTCCTTCAAAGCCAAGTCGAGACACTAAGCGTTCCATACATGAAGTCATCACGGACCCAAAGCAACAGAGGGATGCAAGGGGTTTCAGGGTTATGTGAGGCGAAAGAAGAACAAAAAATGGATCTAAGGAGCCGAGGCCTATGTCTGGTGCCATTGTCATGTATGTCCTATTTAGCTGCTGACAGTGCCGGTGGCGGGGTGTGGCAACAGCCTGATTTTGGTGGCCCAACGCTATGA 1260 0.4476 MESTNLHHLHQDHSHPPQTSSSSSSLSAPSLFGLPTSHSWTPNVALNAGNLNPNFQESNPRSRAFAHKKDIGTYRLLNDSGLGYQWASAEEREVSSTQSDHDLGLQYSNIKEEISDVFPCKFTEMLNSTGSSMEHKDFNALSEKLLLKTLSSGDFYSTSENFANNFGGGMGMGVAPSRRSFSQIYPSINISNLNHSSPAISSSLDMNMQSSDLLNSARFNGGLSQHTQDGLARFDNVSFRLDHMHQHQIDRSSCNSSNIPSHFTNGMAETKRPNTTLVESKASQSQNVPKKSRLESRSSCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQSQVETLSVPYMKSSRTQSNRGMQGVSGLCEAKEEQKMDLRSRGLCLVPLSCMSYLAADSAGGGVWQQPDFGGPTL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3620g00048 419 MobiDBLite consensus disorder prediction 278 294 - -
Pral3620g00048 419 FunFam Transcription factor bHLH123 family 304 366 - -
Pral3620g00048 419 Gene3D - 304 365 IPR036638 GO:0046983
Pral3620g00048 419 MobiDBLite consensus disorder prediction 278 299 - -
Pral3620g00048 419 MobiDBLite consensus disorder prediction 15 29 - -
Pral3620g00048 419 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 128 397 - -
Pral3620g00048 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 357 IPR036638 GO:0046983
Pral3620g00048 419 MobiDBLite consensus disorder prediction 1 29 - -
Pral3620g00048 419 CDD bHLH_AtbHLH_like 301 351 IPR045239 -
Pral3620g00048 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3620g00048 Pral-Chr3620 210965 214995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3620g00048 27 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 40.941 1.45e-71 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3620g00048 - - pcin:129318806 659.448