Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3620g00047 ATGGAATCTACCAATCTCCATCACCTTCATCAAGACCATTCTCATCCTCCTCAGACTTCTTCTTCTTCTTCTTCTTTATCCGCCCCTTCTCTCTTTGGCCTCCCAACCTCCCATTCCTGGACACCAAATGTCGCTCTGAATGCTGGTAACTTGAACCCAAATTTCCAAGAGTCAAATCCCAGATCAAGAGCTTTCGCGCACAAGAAAGACATTGGAACCTATCGTCTTCTGAACGATTCAGGATTAGGTTATCAGTGGGCAAGTGCGGAAGAAAGGGAAGTGAGCAGTACTCAGTCGGATCACGACTTGGGCCTTCAGTATTCAAACATAAAGGAAGAGATCTCAGATGTTTTTCCCTGTAAATTCACTGAAATGCTAAACAGTACTGGTTCTAGTATGGAGCACAAAGATTTCAATGCTCTTAGTGAGAAGCTTTTGCTCAAGACCCTCTCTTCCGGAGACTTCTATTCCACTTCTGAAAATTTTGCTAATAATTTTGGTGGTGGTATGGGTATGGGAGTAGCGCCTAGTAGAAGGAGCTTTAGTCAGATTTACCCAAGCATTAATATTTCGAACTTAAACCATTCTTCCCCAGCTATTTCAAGCTCTTTGGATATGAACATGCAGAGCTCAGATCTATTGAACTCTGCAAGATTTAATGGCGGTTTGAGCCAACATACCCAAGACGGTTTAGCCAGATTCGACAACGTTTCTTTTCGTCTTGATCATATGCATCAGCACCAAATCGACAGGTCTTCATGCAACTCCAGTAATATTCCATCACACTTCACTAATGGCATGGCAGAAACGAAGAGGCCCAACACAACTTTGGTGGAGTCAAAGGCTTCTCAATCTCAAAATGTGCCAAAAAAATCACGATTGGAATCGCGCTCATCATGCCCACCCTTTAAGGTTAGGAAAGAGAAACTAGGAGATAGGATTGCGGCTCTTCAACAGTTGGTGGCTCCTTTTGGCAAGACAGACACAGCATCCGTACTCATGGAGGCTATTGGATACATCAAATTCCTTCAAAGCCAAGTCGAGGTTTCAGGGTTATGTGAGGCGAAAGAAGAACAAAAAATGGATCTAAGGAGCCGAGGCCTATGTCTGGTGCCATTGTCATGTATGTCCTATTTAGCTGCTGACAGTGCCGGTGGCGGGGTGTGGCAACAGCCTGATTTTGGTGGCCCAACGCTATGA 1200 0.445 MESTNLHHLHQDHSHPPQTSSSSSSLSAPSLFGLPTSHSWTPNVALNAGNLNPNFQESNPRSRAFAHKKDIGTYRLLNDSGLGYQWASAEEREVSSTQSDHDLGLQYSNIKEEISDVFPCKFTEMLNSTGSSMEHKDFNALSEKLLLKTLSSGDFYSTSENFANNFGGGMGMGVAPSRRSFSQIYPSINISNLNHSSPAISSSLDMNMQSSDLLNSARFNGGLSQHTQDGLARFDNVSFRLDHMHQHQIDRSSCNSSNIPSHFTNGMAETKRPNTTLVESKASQSQNVPKKSRLESRSSCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQSQVEVSGLCEAKEEQKMDLRSRGLCLVPLSCMSYLAADSAGGGVWQQPDFGGPTL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3620g00047 399 MobiDBLite consensus disorder prediction 275 299 - -
Pral3620g00047 399 MobiDBLite consensus disorder prediction 15 29 - -
Pral3620g00047 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 350 IPR036638 GO:0046983
Pral3620g00047 399 CDD bHLH_AtbHLH_like 301 349 IPR045239 -
Pral3620g00047 399 MobiDBLite consensus disorder prediction 1 29 - -
Pral3620g00047 399 Gene3D - 304 366 IPR036638 GO:0046983
Pral3620g00047 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Pral3620g00047 399 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 127 377 - -
Pral3620g00047 399 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3620g00047 Pral-Chr3620 210965 214996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3620g00047 27 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 38.588 6.90e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3620g00047 - - pcin:129318806 614.764