Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral361g00005 ATGCTCGCGAGGAGGAAGAAGATGGAGCAGCGCTTCACCTTCTCCTCTCTTCTTGATTTCATGGCCACCTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCATATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTAGTATCATTCAGATTAGTCATCGATAGAGAAACTGGAAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACTGCTGCTCTAAGTGCCCGCCGTAACCTTCAGGGTTATGAAATTAATGGACGGCAGTTGCGTGTTGATTTTGCTGAAAATGACAAAGGTGCTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGATTGGCTGCAAATGTTGACCCTCACAAACAAGTAGCTGGGCCAGCTGTCCATGGGGAAGCTGCCCACCGTCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAACTGTCATGGAAGCAGCTCTAGGAGGGCCTCAATCTGGCATCCAGCCAAATCAAAATGGTTTGCGGGTTCAGTCAGGATTGGCCCATGACCCTTTAACTTTGCATCTGGCTAGACTATCTCGGAATCAGCTGACTGAGATTATCTCTGAGCTCAAGGCAATGGCTACACATAACAAGGAATTAGCTCGTCAATTGTTACTTTCTAGACCGCAGTTGCCTAAGGCTCTTTTTCAGGCACAGATAATGCTAGGAATGGTGACCCCTCAAGTGTTGCAAATGCCAAACCTTAGGCAAGTTGCAGGTGAAACCTCCCAGCCTCTGGTAGATGAAAGCCAGCGCGGTCAGTCTGCAGTGCTTCAATCGCTAGCTGGGCTGCCTTCTCATGCGCAGATCAAATTGCCATCTGGCTTGATGCCCAATATTCAAGAAACTCAAGCAAGTGCTTTACATCATAATTCTTTGGTTCCTAATCAATTACCTGCACACCCAAAGCCTCCTTTGCAGCCTCGAATCCAGCTTCCACAACATCCAAGCAACCCAGTGGTACAGCTGGGCACATTGCCTGGGCATTCTAGTTCATCGCTTCCTTCTATGCGCCCCCAGTCTTCATTTGGTTTGCCTGTTAGACCACCAATTCAGCTGGCAAGTTCAAATTCTCTGAATCAGCCATTGCATTTGCTACAACATTCCGGACAAATTGGTAACTCAAGTGTAGGACAAAGTATTCGGATGATTCATCCCGATGCAGGCTTTCAGCCTGGCTCGTCCATATCATCAGGTATTCCTCAGTCAATTGGTAGGGAAGCAGACAGATCAGCTAAAGTCGTTGAAGATTCTAATTGGGCCAAGAAAAGTAGTACATATTCAAACATTGCTCTCGGATCAGGAGAGAAAACAAATGAGCCTTTGGAACCATTTAGCCGCCCTTCAAAGCTGGCTAAATTGGATGATGGAAGGAGCTCCTCTTTCTCCGCAGCAGTTGCGAATGTACCTGTTTCCAAGGGATCTTCCCATGTTCTTGGAAGTGTGTCATTGCCTGTAAATGCAACTTCCAAATCAGAAGCGCGATACCCTGAGCAACAATCCTCTCAGGCTCAGCTACCTTCGGATGTGGAATCGGTTTTACTGCAACAAGTGTTGAGTCTAACGCCGGAGCAATTGAGTTCCTTGCCACCGGAGCAGCAACAGCAGGTTTTTCAGCTTCAGCAGGCTCTCCGGCGAGATCAGACCCAGCCTTCATAG 1713 0.4775 MLARRKKMEQRFTFSSLLDFMATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLAANVDPHKQVAGPAVHGEAAHRQPIGLHIAITAATVMEAALGGPQSGIQPNQNGLRVQSGLAHDPLTLHLARLSRNQLTEIISELKAMATHNKELARQLLLSRPQLPKALFQAQIMLGMVTPQVLQMPNLRQVAGETSQPLVDESQRGQSAVLQSLAGLPSHAQIKLPSGLMPNIQETQASALHHNSLVPNQLPAHPKPPLQPRIQLPQHPSNPVVQLGTLPGHSSSSLPSMRPQSSFGLPVRPPIQLASSNSLNQPLHLLQHSGQIGNSSVGQSIRMIHPDAGFQPGSSISSGIPQSIGREADRSAKVVEDSNWAKKSSTYSNIALGSGEKTNEPLEPFSRPSKLAKLDDGRSSSFSAAVANVPVSKGSSHVLGSVSLPVNATSKSEARYPEQQSSQAQLPSDVESVLLQQVLSLTPEQLSSLPPEQQQQVFQLQQALRRDQTQPS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral361g00005 570 Pfam Transcription termination and cleavage factor C-terminal 532 564 IPR026896 GO:0031124
Pral361g00005 570 Gene3D - 526 569 IPR038192 -
Pral361g00005 570 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 22 566 - -
Pral361g00005 570 MobiDBLite consensus disorder prediction 449 474 - -
Pral361g00005 570 MobiDBLite consensus disorder prediction 316 330 - -
Pral361g00005 570 SUPERFAMILY RNA-binding domain, RBD 23 122 IPR035979 GO:0003676
Pral361g00005 570 MobiDBLite consensus disorder prediction 312 360 - -
Pral361g00005 570 CDD RRM_CSTF2_RNA15_like 27 104 - -
Pral361g00005 570 MobiDBLite consensus disorder prediction 543 570 - -
Pral361g00005 570 MobiDBLite consensus disorder prediction 106 129 - -
Pral361g00005 570 FunFam Cleavage stimulating factor 64 20 137 - -
Pral361g00005 570 Pfam Hinge domain of cleavage stimulation factor subunit 2 184 249 IPR025742 -
Pral361g00005 570 Gene3D - 175 251 - -
Pral361g00005 570 SMART rrm1_1 28 102 IPR000504 GO:0003723
Pral361g00005 570 MobiDBLite consensus disorder prediction 403 437 - -
Pral361g00005 570 MobiDBLite consensus disorder prediction 331 358 - -
Pral361g00005 570 FunFam Cleavage stimulating factor 64 176 251 - -
Pral361g00005 570 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 100 IPR000504 GO:0003723
Pral361g00005 570 Gene3D - 4 132 IPR012677 -
Pral361g00005 570 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral361g00005 Pral-Chr361 35649 43089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral361g00005 29 103 Eukaryotic Initiation Factors Gene Family AT2G23350 30.667 2.30e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral361g00005 K14407 - gmx:100806489 682.174