Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3619g00003 ATGCAATCAAACGGTTCTGATTCCCAACAACAACAGCAACCATCGGAACAGAATCCACGGCAACAGAAAACGCCAACGCAGACGCCGCCACCACTACAGCCACTGGCGCTGCCGCAGCAGTGGATGCCGATGCAATACCCTGTGGCGGCTATGGTAATGCAGCATCACATGATGCCACCCCAGCATTATGGGCCGCCGCCACCTCAGCCCTATATGCCTTACCACCAATACCAGCAGTTACCGCATGTAACTCACCCTCAACAGCATCAGCATCAGGGATCCACCGGCGATAACAAAACGATCTGGGTCGGGGATTTACATCATTGGATGGATGAGAATTATCTCCACCGCTGCTTCGCTTCTACGGGAGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGCCTATCGGAGGGTTATGGATTTGTGGAATTCTATTCCCATGCTACGGCGGAAAACATTTTACAGAATTATGGTTCCATTTTGATGCCCAATACAGATCAGCCTTTTCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCGGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGACAGCATGTTGCATGACACTTTTGCTAGTAGATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGTCGTTCAAAGGGTTATGGCTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCACGCTATGACTGAGATGAATGGTACGTATTGTTCTAGCAGACCAATGCGTATTGGCGCTGCAACCCCTAGGAAATCATCTGTCTACCAACAAGGAGGCCATGCGTCAAATGGAACATCCAACCAATCTGAAGCAGACTCAACAAACACGACTATATTTGTTGGAGGACTTGACCCTAATGTAACAGATGAAGATCTTAGGCAACCATTTTCCCGGTATGGTGAGATAGTCTCTGTCAAGATACCTGTTGGAAAGGGATGTGGATTTGTACAATTTGCAAACAGGAACAATGCTGAAGAGGCACTGCAGAAGCTAAATGGGACAGTGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGCAGTTTAGAGCCGACTTTGGCAACCACTGGAGCGGGGCGTATTATGGAGGTCCTGTTTATGATGGTTATGGGTATGCCTTGCCGCCACCTCATGACCCAAGAATATATGCTGCTGCATATGGTTCTTACCCCATATATGGGGGCCACCAACAACAAGTAAGCTGA 1290 0.4729 MQSNGSDSQQQQQPSEQNPRQQKTPTQTPPPLQPLALPQQWMPMQYPVAAMVMQHHMMPPQHYGPPPPQPYMPYHQYQQLPHVTHPQQHQHQGSTGDNKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAENILQNYGSILMPNTDQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHDTFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSHAMTEMNGTYCSSRPMRIGAATPRKSSVYQQGGHASNGTSNQSEADSTNTTIFVGGLDPNVTDEDLRQPFSRYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQQFRADFGNHWSGAYYGGPVYDGYGYALPPPHDPRIYAAAYGSYPIYGGHQQQVS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3619g00003 429 FunFam Polyadenylate-binding protein RBP47B 185 282 - -
Pral3619g00003 429 CDD RRM3_NGR1_NAM8_like 297 368 - -
Pral3619g00003 429 CDD RRM2_SECp43_like 191 270 - -
Pral3619g00003 429 CDD RRM1_SECp43_like 100 180 - -
Pral3619g00003 429 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 90 374 - -
Pral3619g00003 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 363 IPR000504 GO:0003723
Pral3619g00003 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 163 IPR000504 GO:0003723
Pral3619g00003 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 264 IPR000504 GO:0003723
Pral3619g00003 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723
Pral3619g00003 429 Gene3D - 98 178 IPR012677 -
Pral3619g00003 429 FunFam Polyadenylate-binding protein RBP47 283 401 - -
Pral3619g00003 429 SMART rrm1_1 193 267 IPR000504 GO:0003723
Pral3619g00003 429 SMART rrm1_1 299 366 IPR000504 GO:0003723
Pral3619g00003 429 SMART rrm1_1 100 175 IPR000504 GO:0003723
Pral3619g00003 429 MobiDBLite consensus disorder prediction 1 36 - -
Pral3619g00003 429 SUPERFAMILY RNA-binding domain, RBD 191 371 IPR035979 GO:0003676
Pral3619g00003 429 Gene3D - 283 401 IPR012677 -
Pral3619g00003 429 MobiDBLite consensus disorder prediction 271 299 - -
Pral3619g00003 429 Gene3D - 180 282 IPR012677 -
Pral3619g00003 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723
Pral3619g00003 429 MobiDBLite consensus disorder prediction 1 23 - -
Pral3619g00003 429 FunFam polyadenylate-binding protein RBP47 isoform X2 50 184 - -
Pral3619g00003 429 MobiDBLite consensus disorder prediction 272 299 - -
Pral3619g00003 429 SUPERFAMILY RNA-binding domain, RBD 63 180 IPR035979 GO:0003676
Pral3619g00003 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 370 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3619g00003 Pral-Chr3619 35086 38998 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3619g00003 100 397 Eukaryotic Initiation Factors Gene Family AT2G23350 26.797 9.15e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3619g00003 - - gmx:100785454 648.277