Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3614g00007 ATGGCAGCTGAAGCTCCCTTCAAGAGCCACAAACCTCGCTTTTCTCAGCCGAAGCGGAGGAATCAAGGTGGAAAGCTCAAGTTCCGCTTCGTCCCGAAATCTGAATTGGATTCTTCTAATTCCGAGGTTGATCTTTCGCTTAAAGAATTAAGAATTCGTGAGGTTGACGTCGAGCGAGAATTGGACCCGGGGAACAAGGACGGTTCGGAGCTGAAGAAGGAAGTAGGAAATAAGAGGGAAGATAATCATGTGGATGATTCAAACAAGGAAGGGAATAGTATTTACAGTAGACTGGATACTCTGAGCGATGTAAGGGAGCCGGAATTGTCAGAGGAACAGCTGAGTATAAATGATCAATTGCAAGCAGATGAGGTACACATACACATTGAAGTTTTAGATGAAATTGGCATCACAGCTAAGCTGAATTCTTCTGATGACCATAAGACTGCGAGCAGCAGTGCAGATGACTTCCCATACTCTTTTAAAGTCCAATATCTTCCACCTATTATTTTGACATGTTTGCTGCCAAAGTCATACCCAAGCCATCAACCGCCGCATTTTATAATTTCTGTTAAGTGGTTGGACTCCACAAGAATTTCTAGTCTATGCTCCATGTTAGATTCAATATGGACTGAGCAGCAAGGGCAGGAAGTTATATACCAGTGGGTAGAATGGTTACATGGTTTTTCTCTTTCTCATCTGGGATTTGATAAAGAGATTACTCTTGGTCCTAATGGCGTGAAACATGCCGGAGATGAGCGTGCAGTCTCAGGAGCTGTGTCCCTAGATTTTGATATTCCTTCGTTACGAAGTTACAACAATGAGAGACGTCATGAGAACTTCCTTAAAGAAATGCATGATTGTTGCATTTGCTTCAATGTATATGCAGGTACGGAGTTTGCTCAGTTACCATGTCAGCATTTTTTTTGCTTAAAATGCTTGCAGACCTTTGCTCAGATGCATGTAAAAGAAGGCACCATCAATAATCTTCAATGTCCCAATTCAAAATGTGCTGTTATGATTCCACCCACTCTTTTAAAACGCTTGCTTGGTGATGAAGAGTATGAACGCTGGGAATCCTTGATGTTGGAGAAAACTCTTGCATCAATGTCTGATGTTGCTTATTGCCCAAGATGTGAAACACCTTGTATAGAAGATGAAGAACAACATGCTCAATGCTCTAAATGCTTCTTTAGTTTTTGTACCCTCTGCAGGGAACGACGCCATGTGGGCATAGCATGCATGACCCTAGACATGAAGCTTCAAATTTTGCAAGAGCGCCAAAATTCATCTCAATTAAAGGAAGCTCAGAAGCTGAGGGAACGTGAAAAGATTAATGAAATGCTCAGCGTTAAAGAAATTCATCGTGATTCTAAGCTGTGCCCTTCCTGTCAAATGGCTATTTCCCGAACTGAGGGTTGCAATAAAATGGTGTGTGGTAATTGTGGCCAATATTTCTGTTACCGCTGCAACAAAGCACTTGACGAATCTGATCCTTACGAACATTTTAGGGATGGGTCCTGTGAATTGTTTCCTCAAGAAATGGTAGAGGCTTGGCAAGAACGTATAAACCACCGTCAGGTGGTAGGACAATTACAAGCTGAACTCTTTTTTCAACGTGGCCAAAGATGTCCTAATTGTCGTCAATTTAATGCAAAGGTTGGAAACAATAACCACATGTTTTGCTGGGCATGCCAAAGCCATTATTGCTACTCTTGCAGGGAAATTGTTAGGCGTAGCACGCAGCATTATGGACCCAAGGGTTGCAAACAGCACTCCGATGACTAG 1788 0.4234 MAAEAPFKSHKPRFSQPKRRNQGGKLKFRFVPKSELDSSNSEVDLSLKELRIREVDVERELDPGNKDGSELKKEVGNKREDNHVDDSNKEGNSIYSRLDKXLSDVREPELSEEQLSINDQLQADEVHIHIEVLDEIGITAKLNSSDDHKTASSSADDFPYSFKVQYLPPIILTCLLPKSYPSHQPPHFIISVKWLDSTRISSLCSMLDSIWTEQQGQEVIYQWVEWLHGFSLSHLGFDKEITLGPNGVKHAGDERAVSGAVSLDFDIPSLRSYNNERRHENFLKEMHDCCICFNVYAGTEFAQLPCQHFFCLKCLQTFAQMHVKEGTINNLQCPNSKCAVMIPPTLLKRLLGDEEYERWESLMLEKTLASMSDVAYCPRCETPCIEDEEQHAQCSKCFFSFCTLCRERRHVGIACMTLDMKLQILQERQNSSQLKEAQKLREREKINEMLSVKEIHRDSKLCPSCQMAISRTEGCNKMVCGNCGQYFCYRCNKALDESDPYEHFRDGSCELFPQEMVEAWQERINHRQVVGQLQAELFFQRGQRCPNCRQFNAKVGNNNHMFCWACQSHYCYSCREIVRRSTQHYGPKGCKQHSDD 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3614g00007 596 Pfam RWD domain 135 228 IPR006575 GO:0005515
Pral3614g00007 596 ProSiteProfiles TRIAD supradomain profile. 285 514 IPR044066 -
Pral3614g00007 596 SUPERFAMILY UBC-like 132 239 IPR016135 -
Pral3614g00007 596 MobiDBLite consensus disorder prediction 57 95 - -
Pral3614g00007 596 SUPERFAMILY RING/U-box 536 593 - -
Pral3614g00007 596 ProSiteProfiles Zinc finger RING-type profile. 289 337 IPR001841 -
Pral3614g00007 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 372 IPR013083 -
Pral3614g00007 596 MobiDBLite consensus disorder prediction 1 28 - -
Pral3614g00007 596 CDD Rcat_RBR_RNF14 447 512 IPR047548 GO:0008270
Pral3614g00007 596 Gene3D - 429 540 - -
Pral3614g00007 596 SMART RWD2001b 112 234 IPR006575 GO:0005515
Pral3614g00007 596 FunFam RBR-type E3 ubiquitin transferase 284 368 - -
Pral3614g00007 596 MobiDBLite consensus disorder prediction 57 93 - -
Pral3614g00007 596 ProSitePatterns Zinc finger RING-type signature. 306 315 IPR017907 -
Pral3614g00007 596 SUPERFAMILY RING/U-box 448 504 - -
Pral3614g00007 596 CDD BRcat_RBR_RNF14 368 419 - -
Pral3614g00007 596 SUPERFAMILY RING/U-box 284 368 - -
Pral3614g00007 596 SMART ibrneu5 357 415 IPR002867 GO:0008270
Pral3614g00007 596 SMART ibrneu5 444 509 IPR002867 GO:0008270
Pral3614g00007 596 CDD RING-HC_ITT1-like 283 342 - -
Pral3614g00007 596 ProSiteProfiles RWD domain profile. 134 234 IPR006575 GO:0005515
Pral3614g00007 596 SUPERFAMILY RING/U-box 357 420 - -
Pral3614g00007 596 Gene3D Ubiquitin Conjugating Enzyme 92 236 IPR016135 -
Pral3614g00007 596 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 139 501 IPR031127 GO:0004842|GO:0016567
Pral3614g00007 596 MobiDBLite consensus disorder prediction 12 26 - -
Pral3614g00007 596 SMART ring_2 462 491 IPR001841 -
Pral3614g00007 596 SMART ring_2 289 336 IPR001841 -
Pral3614g00007 596 SMART ring_2 545 574 IPR001841 -
Pral3614g00007 596 FunFam RBR-type E3 ubiquitin transferase 430 539 - -
Pral3614g00007 596 Pfam IBR domain, a half RING-finger domain 451 495 IPR002867 GO:0008270
Pral3614g00007 596 Pfam IBR domain, a half RING-finger domain 357 415 IPR002867 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3614g00007 301 517 ARIADNE family AT3G27710 24.554 6.17e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3614g00007 K11971 - gmx:100500662 822.772