Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3614g00004 ATGTCAGACCGGACCACATTATCCGGTGTCTCACCGGAGGGAAAGAAGAACGAAGGAGGGAAAACGGAGAGAAAAGTTCCCCTGTTTAAGTTGTTCTCTTTCGCTGACTCCTATGATTATGTTTTAATGGCCATTGGATCTGTCGGTGCATGTGTTCATGGCGCTTCTGTTCCTGTTTTCTTCGTCTTCTTCGGAAAGATGATCAATATCATAGGTCTGGCTTACCTCTTTCCTCGACAAGCTTCTCATCAAGTTGCCAAGTACTCCTTGGATTTTGTTTATCTGAGTATAGCAATCTTGTTTTCGTCTTGGACAGAGGTGGCATGTTGGATGCACACTGGAGAACGACAAACAGCGAAGATGAGAATGGCTTATTTAAGATCAATGTTGAATCAAGATATAAGTTTATTTGATACAGAGGCGTCAACCGGGGAGGTTATTTCTGCAATTTCCGGTGAGATCCTCGTTGTTCAAGATGCTCTGTCTGAGAAGGTAGGAAATTTCTTGCACTACATAAGCCGATTCGTGGTGGGATTTATCATTGGGTTTGTCAGAATATGGCAGATCAGTCTAGTCACACTTGCGATTGTTCCCTTGATTGCCATCGCCGGAGGCCTTTATGCTTATGTTACCGTCGGACTTATTGCCGAAGTCCGAAAAGCCTACGTTAGGGCTGGTGAAATCGCCGAAGAGGTGATAGGAAATGTCAGAATGGTTCAGGCGTTTGCGGGAGAAGAGAGAGCGGTGAGATCATACAAAGCGGCACTTGTGAACACTTATAAGAATGGCCGAAAAGCAGGTTTGGCAAAGGGTCTTGGACTAGGTTCCATGCACTGTGTCCTGTTTCTGTCATGGGCCCTGCTTATTTGGTTCACTAGTGTTATTGTTCACAAGAACATCGCCAACGGAGGCGAGTCTTTTACTACCATGCTCAATGTTGTCATCTCTGGACTGTCGCTTGGGCAGGCAGCACCAGATATATCTGCATTCATCCGAGCTAAGGCAGCGGCTTATCCCATTTTTGAGATGATAGAAAGGGAAACAGTAAGCAAAATCAGCTCAAAAACTGGTCGCAAATCAAGTAAATTGGATGGTCACATCCAACTTAAAGATGTCTGTTTCAGTTATCCATCTCGTCCTGATATAGTTATTTTCAACAAACTCTGTCTTGACATTCCACCTGCCAAAATTTTAGCTTTAGTAGGAGGAAGTGGGTCAGGAAAGAGCACTATTATATCACTGATTGAGCGCTTCTATGAACCCCTTTCTGGACAAATACTATTAGATGGGAATGATATTCGGGAACTCGATCTTAAATGGCTAAGAAGCCAAATTGGGCTGGTTAATCAAGAACCTGCCCTTTTTACCACTAGCATTAGAGAAAATATACTGTATGGAAAAAATGATGCTACTCTTGAAGAACTTCAACATGCCGTGAAGCTTTCAGATGCTGAGTCTTTCATTAACAATCTTCCTGAAAGGTTGGAAACTCAGGTTGGTGAGAGAGGGATACAACTTTCAGGTGGACAAAAACAAAGGATTGCAATATCTCGTGCCATTTTGAAGAACCCATCAATCCTTTTATTGGATGAAGCTACCAGTGCTCTGGATGCGGAATCTGAGAAGAGTGTACAAGAAGCTCTTGATCGCGTCATGGTTGGTAGAACAACTGTCATAGTGGCACACAGACTTTCTACAATTAGGAATGCAGATATGATTGCTGTTGTTCAGGGAGGGAGAATTGTAGAAATTGGTAACCATGAGGAGCTTATTTCTAACCCAAATGGCGCTTACGCATCTCTTGTTCAACTCCAGGAGAAAGCTTCTTCGCAAGGTCACCAGCCAGAGGGTTCTGCTCCCAATGTGGCAGCAAGGTACTCAAGAGAATTCTCGTGTACAACGAGCCTTAGCGGTAGTTTTCGGTCAGATGAAGAATCTTTAGGTCGCGTTTGTGCTGATGAAGTGGAAAGTGAAGACAAGTCAAGTCATGTTTCTGTAAAAAGGCTGTATTCAATGGTTGCACCTGACTGGTTTTATGGGGTTTTTGGCACCTTCGGTGCATTTATTGCTGGAGCTCAAATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTGTCATACTATATGGACTGGGATACAACACGTCACGAGGTTAAAAAAATCACTTTCCTATTCTGTGGGGCAGCAATAGTGACTGTTATTGCCCATGCCATTGAGCATCTTTCTTTTGGAATCATGGGCGAGCGACTTACTCTTCGTGTACGAGAAATGATATTTTCTGCTATTTTGAAAAATGAAATTGGCTGGTTTGATGACACAAACAACACAAGTTCTATGCTATCATCTCGTTTAGAGGCAGATGCAACTTTATTCCGAACTATAGTTGTTGACCGGTCTACAATTCTCTTACAGAATGTTGGTCTGGTTGTTGCCTCGTTTATTATTGCCTTCATGTTGAACTGGAGATTAACACTAGTTGTCTTGGCCACATACCCTTTGATCATTAGTGGTCACATCAGCGAGAAACTTTTTATGAAAGGCTATGGTGGCAACTTGAGCACTGCATATCTGAAAGCCAACAGGCTGGCTGGGGAAGCTGTCAGTAACATGCGTACTGTTACTGCATTTTGTTCTGAAGAAAAGGTCCTAAAACTTTATGCTGATGAGCTCGTCCAGCCTTCTAAGCTTTCATTTAAACGGGGACAAATTGCTGGCATATTCTATGGCATTTCGCAGTTCTTCATTTTCTCTTCTTATGGCCTTGCCTTGTGGTATGGTTCAGTTTTGATGGAAAAGGAGCTGTCTAGCTTCAAATCCGTCATGAAGTCATTTATGGTTCTAATCGTAACTGCATTGGGCATGGGGGAGACATTGGCGTTGGCTCCGGACCTTTTGAAAGGGAACCAAATGGTCACCTCAGTTTTTGAAGTGATGGATAGAAAGTCAGGAATAGTGGCCGATGCCGGAGAAGAGCTTAAGATAGTTGAGGGAACAATCGAGCTAAAAAGCATCCATTTCAGTTACCCTTCAAGGCCTGATGTAGTAATTTTTGAAGATTTTAATCTGAAAGTGCCTTCAGGCAAGAGTATTGCCTTAGTGGGACAAAGCGGTTCTGGGAAAAGCTCTATCATCTCCCTTATACTCAGATTTTATGATCCATCGTCTGGGAGAGTGATGATTGATGGAAAAGACATCAGGAGACTCCATTTGAAGTCTTTAAGGAAGCATATTGGTCTGGTGCAACAAGAACCCGCTCTTTTTGCAACATCAATCTATGAAAACATTCTCTATGGAAAGGAAGGAGCTTCTGACTCAGAGGTAATTGAAGCAGCTAAGCTTGCCAATGCGCACAGTTTCATCAGTTCTCTTCCGGATGGTTACACTACCAAAGTTGGCGAACGAGGCGTACAACTCTCTGGTGGCCAGAGACAAAGGGTAGCCATAGCCAGAGCTATTCTAAAGAACCCAGAAATCTTGCTACTAGATGAAGCCACTAGTGCACTTGATGTGGAATCTGAGCGTGTGGTGCAACAAGCTCTGGACAGATTGATGCAGAACAGGACAACAATTATGGTGGCACACAGGCTATCCACAATAAGAAATGCAGATGAAATCTCAGTTTTGCAGAACGGGAAGATAATAGAGCAAGGGACTCATTCAAGTCTTATAGAGAACAAAAATGGAGCATATTTTAAATTAATCAATCTGCAACAATGCCAGTGA 3726 0.4305 MSDRTTLSGVSPEGKKNEGGKTERKVPLFKLFSFADSYDYVLMAIGSVGACVHGASVPVFFVFFGKMINIIGLAYLFPRQASHQVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQTAKMRMAYLRSMLNQDISLFDTEASTGEVISAISGEILVVQDALSEKVGNFLHYISRFVVGFIIGFVRIWQISLVTLAIVPLIAIAGGLYAYVTVGLIAEVRKAYVRAGEIAEEVIGNVRMVQAFAGEERAVRSYKAALVNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLIWFTSVIVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERETVSKISSKTGRKSSKLDGHIQLKDVCFSYPSRPDIVIFNKLCLDIPPAKILALVGGSGSGKSTIISLIERFYEPLSGQILLDGNDIRELDLKWLRSQIGLVNQEPALFTTSIRENILYGKNDATLEELQHAVKLSDAESFINNLPERLETQVGERGIQLSGGQKQRIAISRAILKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIAVVQGGRIVEIGNHEELISNPNGAYASLVQLQEKASSQGHQPEGSAPNVAARYSREFSCTTSLSGSFRSDEESLGRVCADEVESEDKSSHVSVKRLYSMVAPDWFYGVFGTFGAFIAGAQMPLFALGISHALVSYYMDWDTTRHEVKKITFLFCGAAIVTVIAHAIEHLSFGIMGERLTLRVREMIFSAILKNEIGWFDDTNNTSSMLSSRLEADATLFRTIVVDRSTILLQNVGLVVASFIIAFMLNWRLTLVVLATYPLIISGHISEKLFMKGYGGNLSTAYLKANRLAGEAVSNMRTVTAFCSEEKVLKLYADELVQPSKLSFKRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELSSFKSVMKSFMVLIVTALGMGETLALAPDLLKGNQMVTSVFEVMDRKSGIVADAGEELKIVEGTIELKSIHFSYPSRPDVVIFEDFNLKVPSGKSIALVGQSGSGKSSIISLILRFYDPSSGRVMIDGKDIRRLHLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHSFISSLPDGYTTKVGERGVQLSGGQRQRVAIARAILKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTIMVAHRLSTIRNADEISVLQNGKIIEQGTHSSLIENKNGAYFKLINLQQCQ 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3614g00004 1241 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 340 - -
Pral3614g00004 1241 Pfam ABC transporter 1019 1167 IPR003439 GO:0005524
Pral3614g00004 1241 SUPERFAMILY ABC transporter transmembrane region 25 337 IPR036640 GO:0005524|GO:0016020
Pral3614g00004 1241 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 985 - -
Pral3614g00004 1241 Gene3D ABC transporter type 1, transmembrane domain 30 969 IPR036640 GO:0005524|GO:0016020
Pral3614g00004 1241 CDD ABC_MTABC3_MDL1_MDL2 1000 1238 - -
Pral3614g00004 1241 Gene3D - 357 606 IPR027417 -
Pral3614g00004 1241 Pfam ABC transporter transmembrane region 682 953 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3614g00004 1241 Pfam ABC transporter transmembrane region 45 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3614g00004 1241 FunFam ABC transporter B family member 1 30 366 - -
Pral3614g00004 1241 CDD ABC_MTABC3_MDL1_MDL2 367 605 - -
Pral3614g00004 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1000 1236 IPR003439 GO:0005524
Pral3614g00004 1241 PANTHER ABC TRANSPORTER B FAMILY 13 607 IPR039421 -
Pral3614g00004 1241 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524|GO:0016887
Pral3614g00004 1241 SMART AAA_5 394 586 IPR003593 GO:0016887
Pral3614g00004 1241 SMART AAA_5 1027 1213 IPR003593 GO:0016887
Pral3614g00004 1241 FunFam ABC transporter B family member 1 660 968 - -
Pral3614g00004 1241 Pfam ABC transporter 386 534 IPR003439 GO:0005524
Pral3614g00004 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1238 IPR027417 -
Pral3614g00004 1241 Gene3D - 991 1241 IPR027417 -
Pral3614g00004 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3614g00004 1241 SUPERFAMILY ABC transporter transmembrane region 667 981 IPR036640 GO:0005524|GO:0016020
Pral3614g00004 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral3614g00004 1241 FunFam ABC transporter B family member 19 357 606 - -
Pral3614g00004 1241 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524|GO:0016887
Pral3614g00004 1241 FunFam ABC transporter B family member 4 990 1241 - -
Pral3614g00004 1241 MobiDBLite consensus disorder prediction 1 21 - -
Pral3614g00004 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 605 IPR027417 -
Pral3614g00004 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 603 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3614g00004 Pral-Chr3614 41332 50032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3614g00004 38 611 Calmodulin-binding Proteins AT2G36910 39.519 7.11e-113 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3614g00004 K05658 - gmx:100810688 2051.94