Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3612g00078 ATGATGGCTCTGCTTGAGACTCTTTCGCCTAATGAGCTTTACAACTTCATTATCCATGACACTATCTCTGCAACCCCCTTTATCCACCTTGATTCCTCCTCAGAAGCTGCTGTCTTGTTTGAGAACAGAGTGAATCCAGTCGAACATGACCCTGCAATGTTCGGTGATTTCTCTTCTTCAAGGAAACGTCGTCATTCTGATGAGCTTCAGGTGCCTGTTGTGCAAGGAAGGAAGAAGAGGAGAAGGAAGCCAAGAGTTTGTAAGAACAAAGAAGAAGCTGAGACGCAGAGAATGACCCACATTGCGGTTGAAAGAAACCGCCGCAAGCAGATGAATGAGCATCTCGCCGTCCTGCGTTCACTCATGCCTGAATCCTACGTCCAAAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAATTTGTGAAGGAGCTTGAGCATCTGCTGCAGTCACTTGAAGCTAAGAAATTGCAGCTTCTGCAACAAGATGCAGCACAAACTAATGAAGACTCTTCTTCCCCTTCTTCCATTTTCAAACTCATGAATCCCCCTTTTGCACAATTCTTTTCTTATCCTCAGTACACGTGGTCTCAGGCTCCAACCAAATATCCTTCCAAGACCAAGGCAGCCATAGCTGATATTGAGGTTACTTTGATAGAGACACATGCAAACCTTAGAATTCTGTCACGGAGAAGCCCCACGCTGTTGTCAAAGCTGGTCTCTGGTTTTCAATCACTCTACCTCACCATCCTTCATCTTAATGTCACCACCATCGACCCTTTGGTGCTTTATTCTATCAGTGCTAAGGTTGAAGAAGGATGCCACCTGGGTTCGGCGGAGGATATAGCGACAGCAGTTCATCACTTGCTCAGAAGAATTGAGGAAGAAGCTTCCCGTTGCGGTTGA 909 0.4664 MMALLETLSPNELYNFIIHDTISATPFIHLDSSSEAAVLFENRVNPVEHDPAMFGDFSSSRKRRHSDELQVPVVQGRKKRRRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEAKKLQLLQQDAAQTNEDSSSPSSIFKLMNPPFAQFFSYPQYTWSQAPTKYPSKTKAAIADIEVTLIETHANLRILSRRSPTLLSKLVSGFQSLYLTILHLNVTTIDPLVLYSISAKVEEGCHLGSAEDIATAVHHLLRRIEEEASRCG 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3612g00078 302 SMART finulus 101 152 IPR011598 GO:0046983
Pral3612g00078 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 164 IPR036638 GO:0046983
Pral3612g00078 302 Coils Coil 143 163 - -
Pral3612g00078 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 146 IPR011598 GO:0046983
Pral3612g00078 302 CDD bHLH_AtFAMA_like 98 177 - -
Pral3612g00078 302 Gene3D - 87 164 IPR036638 GO:0046983
Pral3612g00078 302 PANTHER MAX DIMERIZATION, MAD 46 298 - -
Pral3612g00078 302 MobiDBLite consensus disorder prediction 74 94 - -
Pral3612g00078 302 Pfam Helix-loop-helix DNA-binding domain 96 147 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3612g00078 Pral-Chr3612 507770 509593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3612g00078 87 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G22490 56.757 1.27e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3612g00078 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3612g00078 - - pvu:PHAVU_003G284500g 382.489