Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3612g00077 ATGGCTGCGCTTGGCAACCCAAAAACTTGGATTCCCTACGTGAACATCAGAGATTGCTCTCAAGGTTTTTGCAGTGTTTACTGTCCACAGTGGTGTTATATAGTGCTTCCTCCTCCTCCTCCACCTGCCCTCGATTTCCCTCAAGATGACGATTCATCCCCAAATTTCTCTCCTCTCGTTATAGCCATAATTGGGATATTGGCCAGTGCTTTCCTTCTGGTAAGTTATTACACGTTCATGTCCAAGTACTGTGGGAACAGAGGAAGATCTTCAGACGGAGAGAATCTTCCCCAGAATGATGAGATTGAAGATAATCACAACCCTTCGCTGCACGAGCCCTGGCATGTCCAAACCAGTGGGTTAGATGAAGCTCTGATAAAGTCAATCACAGTGTGTAAGTACAAAAAAGGAGATGGGTTGGTTGGTGTCACAGACTGCTCTGTTTGTCTCAGTGAGTTTCGAGAAGATGAGCATATCAGACTGTTGCCTAAATGCAGCCACGCTTTTCACCTTCCGTGTATCGATCAATGGCTCAAATCTCACTCTAATTGTCCTCTCTGTCGTGCTCTTATCTTCACCTTCAATGCTTCGACCCCTCAAGTGGTTCCACCTGTGACAGAGGAATCTTCCTCAGGAAATGGATCTTCTTCACGGGAAATTCAGAATGTGAATGAGGAAAATGGAGGGGTTGGAAGAAGAAACGAAGAAACAGTTGGGGATGGGGAAGAAGGTCCGAAGCCAGCGTTGCGTGCTTTTAGCGATCTGGGTTTTCTGCGAGGAAGGCATAGAATGATTGAGATGATCAGAGACGAAGGGGATGAAGACGATGAAGCCATAAGAAGGTCAGTGTCCATGGATCATCATTCGCTACAAATTGGTGGAGTAGGATCAAACGAAGCGGGCCCTTCAAAGAGATCACAAGGAGAAAGTAGCAAGTCTAGTAGCAGAAGAAGGGTGCTTCTGCATTGTGTGTTGAGTCCAATCACAATGAAGAGATCATTTTCCAGTGGAAGATTCTCGTTTCGCAGAAATGGAGGAAGGCAAGGGATTATCCCTGTCTGA 1062 0.4614 MAALGNPKTWIPYVNIRDCSQGFCSVYCPQWCYIVLPPPPPPALDFPQDDDSSPNFSPLVIAIIGILASAFLLVSYYTFMSKYCGNRGRSSDGENLPQNDEIEDNHNPSLHEPWHVQTSGLDEALIKSITVCKYKKGDGLVGVTDCSVCLSEFREDEHIRLLPKCSHAFHLPCIDQWLKSHSNCPLCRALIFTFNASTPQVVPPVTEESSSGNGSSSREIQNVNEENGGVGRRNEETVGDGEEGPKPALRAFSDLGFLRGRHRMIEMIRDEGDEDDEAIRRSVSMDHHSLQIGGVGSNEAGPSKRSQGESSKSSSRRRVLLHCVLSPITMKRSFSSGRFSFRRNGGRQGIIPV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3612g00077 353 SMART ring_2 146 187 IPR001841 -
Pral3612g00077 353 FunFam RING-H2 finger protein ATL54 121 194 - -
Pral3612g00077 353 PANTHER RING-H2 FINGER PROTEIN ATL16 44 317 IPR044600 GO:0016567|GO:0016740
Pral3612g00077 353 MobiDBLite consensus disorder prediction 202 228 - -
Pral3612g00077 353 CDD RING-H2_EL5-like 145 188 - -
Pral3612g00077 353 SUPERFAMILY RING/U-box 128 194 - -
Pral3612g00077 353 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Pral3612g00077 353 MobiDBLite consensus disorder prediction 202 251 - -
Pral3612g00077 353 MobiDBLite consensus disorder prediction 229 243 - -
Pral3612g00077 353 MobiDBLite consensus disorder prediction 90 109 - -
Pral3612g00077 353 Pfam Ring finger domain 145 188 IPR001841 -
Pral3612g00077 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 193 IPR013083 -
Pral3612g00077 353 MobiDBLite consensus disorder prediction 285 317 - -
Pral3612g00077 353 MobiDBLite consensus disorder prediction 94 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3612g00077 Pral-Chr3612 498678 500277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3612g00077 1 247 C3H Transcription Factor Family AT3G03550 50.752 5.03e-72 226