Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3612g00054 ATGGCCTCCGACAGCTTTGCCGACAAAAATGCTGTCTTCAGAAAACTCAAGGCAAAGTCCGATAACAAGATGTGTTTCGATTGCAATGCAAAGAATCCAACTTGGGCGTCGGTTACATATGGGATCTTCCTCTGCATCGATTGCTCGGCTGTTCATCGCAGCCTTGGTGTGCACGTCAGCTTTGTGAGATCTACAAATTTAGACTCATGGACTCCTGAGCAGCTGAGAACAATGAGCTTTGGAGGAAACAATCGTGCACATGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGAAAAATTGAAGCCAAGTATACATCTAGAGCTGCAGAGCTGTATAGACAACTTCTCTCCAAGGAAGTAGCTAAAAGTATGGCAGAGGAGGCAGGTTTGCCATCCTCACCTGTTGCTTCTCAGTCTACACAAGTAGCTAATGGACTTCCTGAAGTCAGAACCAATGAACCGCCAAAAGAGAACATTATGGAAAAGCCAGAAATGCCTGAGAGCACTGCTTCCCCTAAAGCTTCTCATACAACAGTTTCCAGTACTGTCAAGAAACCTATTGGTGTCAAAAAGGTTGGCAAGACTGGGGGCCTTGGTGCTCGGAAGCTTACTAAAAAGCCAAGTGAATCTCTATATGAACAGAAGCCAGAAGAAGCACCTGCTCCCGTTCCTTCCTCATCAAGCCATGCCTTGGCGGCTGGCCCATCCTTGACATCTCGGTTTGAGTACGTTGAAAATCTCCAGTCATCTGAGTTAAATTCTGCTGGAGATTCACACGTACTCAGTCATGTGGCTGCACCAAAGTCATCGAGCTTTTTTGCTGATTTTGGTATGGATAGTGGCTTCCCAAAACGGTCTGGGTCAAACTCCTCAAAAATGCAAATTCAGGATTCTGATGAAGCAAGGAAGAAGTTCTCAAATGCTAAATCTATATCCTCAGCCCAATTTTTTGGAGATCAGAACAAAGCTGCAGATGCGGACAGTCAAGTTACTTTGGCAAAGTTCTCGGGTTCAACTGCCATCTCTAGTGCAGATCTTTTTGGTCATTCGGCAGATCCCTCCATTGATATCAGTGCAAGTGACCTCATCAATCGTCTATCTTTTCAGGCACAGCAGGATATCTCTTCTATCAAAAACATTGCCGGAGAGACTGGGAAGAAGCTGAGTTCTTTGGCATCCACTTTGATAACAGACCTTCAGGACAGAATCCTCTAA 1218 0.4507 MASDSFADKNAVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLRTMSFGGNNRAHVFFKQHGWTDGGKIEAKYTSRAAELYRQLLSKEVAKSMAEEAGLPSSPVASQSTQVANGLPEVRTNEPPKENIMEKPEMPESTASPKASHTTVSSTVKKPIGVKKVGKTGGLGARKLTKKPSESLYEQKPEEAPAPVPSSSSHALAAGPSLTSRFEYVENLQSSELNSAGDSHVLSHVAAPKSSSFFADFGMDSGFPKRSGSNSSKMQIQDSDEARKKFSNAKSISSAQFFGDQNKAADADSQVTLAKFSGSTAISSADLFGHSADPSIDISASDLINRLSFQAQQDISSIKNIAGETGKKLSSLASTLITDLQDRIL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3612g00054 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Pral3612g00054 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 405 - -
Pral3612g00054 405 MobiDBLite consensus disorder prediction 129 233 - -
Pral3612g00054 405 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Pral3612g00054 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Pral3612g00054 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Pral3612g00054 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Pral3612g00054 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Pral3612g00054 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Pral3612g00054 405 MobiDBLite consensus disorder prediction 284 305 - -
Pral3612g00054 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Pral3612g00054 405 Pfam Putative GTPase activating protein for Arf 12 110 IPR001164 GO:0005096
Pral3612g00054 405 MobiDBLite consensus disorder prediction 171 185 - -
Pral3612g00054 405 MobiDBLite consensus disorder prediction 133 148 - -
Pral3612g00054 405 Gene3D Arf GTPase activating protein 1 137 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3612g00054 Pral-Chr3612 400855 406153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3612g00054 13 91 C2H2 Transcription Factor Family AT4G21160 45.000 9.96e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3612g00054 K12493 K11855 gmx:100785169 644.425