Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3612g00032 ATGTCTCCACCGCTGCTGGTTGCTGAGGAGGAAGGGCAGAGCAATATTTCGACAGTAGCATCTTCACCGTCCTTGGACTCTATCTCCCATAATGGAACTGCATTAAAAGAGCGTAATTACCTTGGATTGTCAGATTGTTCCTCATCAGTTGACAGTTCTAGTGTCCCAAGCATGTCAGATGAGAAAAAGGACAACATGAATTTGAAGGCTACTGAGTTGAGGTTGGGTCTTCCTGGATCCCAGTCTCCTGAAAGGGATTCAGATCTTTATGCATCGAACTCAACAAAGCTTGATGAGAAACCGCTATTTCCTTTGCTTCCTTCAAAAGATGGAATATGTTCATCATCCCAAAAACATGTGGTTTTAGGAAACAAGAGAGGTTTCTCTGACACCATGGAGGGTTTCCCAGAGGGGAATTTTACTGGTACTCCAGGGATAAATGTAATGTCATCTAGATCTTCTGGAGCTCAGCCAACCTTTATGAAAGAAATACCTTCTAAAGTTTCACAGGAACGGCCTTCTGCAGCCACTGGACTTGGTCATAATCATGGGGGTACTAATGCTAATGGCAGTGCGCCAGCTGCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATATAGGAAGAATTCATTGGCTAATACTTCAAAGAACAATGATGAAGTTGATGGAAAACCTGGTCCTGCTGCTCTTTTCGTGAAGGTGAGCATGGATGGTGCTCCTTATCTAAGGAAGGTAGATCTAAGGAATTATACAACATATCAAGAACTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCTCATGGTGCTTCAGGCAGAGAAATGTTAAGTGAGAGCAAATTGAGGGATCTTCTGCATGGTTCTGAGTATGTTCTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTACCATGGGGGATGTTCATCGAGACATGCAGGAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTGGCTCCCAGAGCCATGGAAAAATCCAAGAGCAGGAGCTAG 1056 0.4394 MSPPLLVAEEEGQSNISTVASSPSLDSISHNGTALKERNYLGLSDCSSSVDSSSVPSMSDEKKDNMNLKATELRLGLPGSQSPERDSDLYASNSTKLDEKPLFPLLPSKDGICSSSQKHVVLGNKRGFSDTMEGFPEGNFTGTPGINVMSSRSSGAQPTFMKEIPSKVSQERPSAATGLGHNHGGTNANGSAPAAKAQVVGWPPIRSYRKNSLANTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSHGASGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFIETCRRLKIMKGSDAIGLAPRAMEKSKSRS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3612g00032 351 ProSiteProfiles PB1 domain profile. 231 335 IPR000270 GO:0005515
Pral3612g00032 351 MobiDBLite consensus disorder prediction 11 27 - -
Pral3612g00032 351 MobiDBLite consensus disorder prediction 169 193 - -
Pral3612g00032 351 MobiDBLite consensus disorder prediction 1 27 - -
Pral3612g00032 351 MobiDBLite consensus disorder prediction 44 61 - -
Pral3612g00032 351 SUPERFAMILY CAD & PB1 domains 229 332 - -
Pral3612g00032 351 Gene3D - 228 345 - -
Pral3612g00032 351 MobiDBLite consensus disorder prediction 44 90 - -
Pral3612g00032 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 338 IPR003311 GO:0005634|GO:0006355
Pral3612g00032 351 MobiDBLite consensus disorder prediction 169 195 - -
Pral3612g00032 351 FunFam Auxin-responsive protein 226 343 - -
Pral3612g00032 351 Pfam AUX/IAA family 71 342 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3612g00032 Pral-Chr3612 250954 256005 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3612g00032 233 345 B3 DNA Binding Superfamily AT1G30330 27.434 1.64e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pral3612g00032 AUX_IAA 1.1e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3612g00032 K14484 - gmx:547502 529.635