Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3612g00030 ATGTCTCCACCGCTGCTGGTTGCTGAGGAGGAAGGGCAGAGCAATATTTCGACAGTAGCATCTTCACCGTCCTTGGACTCTATCTCCCATAATGGAACTGCATTAAAAGAGCGTAATTACCTTGGATTGTCAGATTGTTCCTCATCAGTTGACAGTTCTAGTGTCCCAAGCATGTCAGATGAGAAAAAGGACAACATGAATTTGAAGGCTACTGAGTTGAGGTTGGGTCTTCCTGGATCCCAGTCTCCTGAAAGGGATTCAGATCTTTATGCATCGAACTCAACAAAGCTTGATGAGAAACCGCTATTTCCTTTGCTTCCTTCAAAAGATGGAATATGTTCATCATCCCAAAAACATGTGGTTTTAGGAAACAAGAGAGGTTTCTCTGACACCATGGAGGGTTTCCCAGAGTCTGTGGTGCAGGGGAATTTTACTGGTACTCCAGGGATAAATGTAATGTCATCTAGATCTTCTGGAGCTCAGCCAACCTTTATGAAAGAAATACCTTCTAAAGTTTCACAGGAACGGCCTTCTGCAGCCACTGGACTTGGTCATAATCATGGGGGTACTAATGCTAATGGCAGTGCGCCAGCTGCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATATAGGAAGAATTCATTGGCTAATACTTCAAAGAACAATGATGAAGTTGATGGAAAACCTGGTCCTGCTGCTCTTTTCGTGAAGGTGAGCATGGATGGTGCTCCTTATCTAAGGAAGGTAGATCTAAGGAATTATACAACATATCAAGAACTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCTCATGGTGCTTCAGGCAGAGAAATGTTAAGTGAGAGCAAATTGAGGGATCTTCTGCATGGTTCTGAGTATGTTCTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTACCATGGGGGATGTTCATCGAGACATGCAGGAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTGGGAGTAAAGCAGAGCATGGGTTAA 1053 0.4378 MSPPLLVAEEEGQSNISTVASSPSLDSISHNGTALKERNYLGLSDCSSSVDSSSVPSMSDEKKDNMNLKATELRLGLPGSQSPERDSDLYASNSTKLDEKPLFPLLPSKDGICSSSQKHVVLGNKRGFSDTMEGFPESVVQGNFTGTPGINVMSSRSSGAQPTFMKEIPSKVSQERPSAATGLGHNHGGTNANGSAPAAKAQVVGWPPIRSYRKNSLANTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSHGASGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFIETCRRLKIMKGSDAIGLGVKQSMG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3612g00030 350 MobiDBLite consensus disorder prediction 174 199 - -
Pral3612g00030 350 MobiDBLite consensus disorder prediction 11 31 - -
Pral3612g00030 350 FunFam Auxin-responsive protein 230 347 - -
Pral3612g00030 350 MobiDBLite consensus disorder prediction 1 31 - -
Pral3612g00030 350 MobiDBLite consensus disorder prediction 44 61 - -
Pral3612g00030 350 Pfam AUX/IAA family 71 344 IPR033389 -
Pral3612g00030 350 Gene3D - 232 349 - -
Pral3612g00030 350 ProSiteProfiles PB1 domain profile. 235 339 IPR000270 GO:0005515
Pral3612g00030 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 342 IPR003311 GO:0005634|GO:0006355
Pral3612g00030 350 MobiDBLite consensus disorder prediction 44 90 - -
Pral3612g00030 350 MobiDBLite consensus disorder prediction 174 197 - -
Pral3612g00030 350 SUPERFAMILY CAD & PB1 domains 233 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3612g00030 Pral-Chr3612 250953 255616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3612g00030 237 344 B3 DNA Binding Superfamily AT5G37020 31.481 2.68e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral3612g00030 AUX_IAA 8e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3612g00030 K14484 - gmx:100500373 507.294