Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3612g00028 ATGGAGCTTACTCAACTCGGTTTTCTGGAGGAACTACTAGCTCCAAGAAGAGACACTTGGGGCACTTTTTCATCTGGGTTGGGTGAGATATTCCCCAACAATGATTGGAGTCTTGATTCTTTTGTAGATAACCCACCTTTAGCTCCTCTGAATCCTCCATTGCATTCTTTTTCCACCCCACTAGACCCTAGATTTGAGTGTTCATACACTAATGAAGCAACATACCCATTTGTTGATGGCTTCACAGTAACAGAGCTTGACTCTTCATACGCCAGGAATGACGATTCTGCGCTATTTCCTGCGCAAGAAAGTAACCCATCAATGGAGGATGAAGAGTTTGGCTTTCTGGGGAGTGAAAATCAGAGCCTTGAAGAGATGAACACTGTCTGCAAAATTGAGGAACAAGCCACAGAAGTTCCAGCCTTCAACGTGGGTTTGTGTGGGGAGAAAAAACCCAAGTCCAAGAAGCTTGAAGGGCAGCCTTCCAAGAATCTAATGGCAGAAAGAAGGAGAAGAAAGCGCCTCAATGACCGCCTCTCCATGCTAAGGTCTATAGTTCCTAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGAGACACCATAGATTATATGAAAGAGCTTCTAGAAAGGATCAGTAAGCTGCAAGAAGAAAGAACGGAAGAGGGTGTAAATCAGATAAACCTATTGGGTAAATCCAGAGAGATGAAGCCAAATGAAGTGATGTTTGAGGTAGAGAAGAGAGATCAAGACACCAAAGTCAGTATCTGTTGTGGCACAAGGGCCGGATTGTTGCTATCAACAGTGAACACCCTCGAAGCATTAGGTCTTGAGATTCAACAATGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGCATCCGAGCAAGGAACTGGTATTAGCTCTGAAGAGATAAAGCAAGCACTGTTCAGAAATGCTGGTTATGGTGGGAGATGTCTATAG 981 0.4383 MELTQLGFLEELLAPRRDTWGTFSSGLGEIFPNNDWSLDSFVDNPPLAPLNPPLHSFSTPLDPRFECSYTNEATYPFVDGFTVTELDSSYARNDDSALFPAQESNPSMEDEEFGFLGSENQSLEEMNTVCKIEEQATEVPAFNVGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERISKLQEERTEEGVNQINLLGKSREMKPNEVMFEVEKRDQDTKVSICCGTRAGLLLSTVNTLEALGLEIQQCVISSFNDFSMQASCSEASEQGTGISSEEIKQALFRNAGYGGRCL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3612g00028 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 97 320 - -
Pral3612g00028 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 222 IPR036638 GO:0046983
Pral3612g00028 326 Gene3D - 148 209 IPR036638 GO:0046983
Pral3612g00028 326 SMART finulus 165 214 IPR011598 GO:0046983
Pral3612g00028 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Pral3612g00028 326 Pfam Helix-loop-helix DNA-binding domain 165 208 IPR011598 GO:0046983
Pral3612g00028 326 Coils Coil 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3612g00028 Pral-Chr3612 206044 207618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3612g00028 150 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.854 3.02e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3612g00028 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3612g00028 - - gmx:100806571 486.108