Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3612g00002 ATGAAGAGAAGTAACTCGTTCATGTGGTGGTTTGGAGTGATTTTGCAGCTTTGCTTCATGCTTTTCAGTAGTTGCTCAGAGGGTTCCACCTCAATTAGAAGAGCTTTACTGAAGAATGACCTCACACCAGCGTCATCTTCTCCTGCTGTCAAACTGGACGAAAATCATAACCAGGTTGTGATAGATAATGGAATCGTCCAAGTCACGTTGTCCAAACCAGAAGGCTACGTCCTTGCAATATCTTATAATGGAATTGACAATGTCCTCGAAGCTAAAAACAAAGATCACAATAGAGGGTATCTTGACGTTGTTTGGGGAAATGATGATGGAGTTTTTCAGAAAATCGAGGGGACCAAGTTCTCAGTTATAGAGAAGACCGAAGATCAAGTGGAAGTCTCATTTTTAAGACAATGGACACATTCCATGGACGGATCTGTCCCTATAAAAATAGACATGAGGTATATAATGCGAAGAGGCAACTCGGGATATTACTCGTACGCAATATTTGAGCGACCGGAAGGGTTTCCAGCGGCAAAGGTTTTCCAGATTAGGCTAGTTTATAAGCTCCGACAAGACAAGTTTCACTATATGGCCATATCAAGGCAGAGGCAAAGAGTAATGCCAACAGCTGAGGATAGAATCAATGGACAGGAACTGGCTTATCCTGAAGCTGTTCTCTTGACCACGGCCAAGAATCCAAGAATCAGAGGAGAGGTGGATGATAAATACCAGTACTCGGCGGAGAACAAAGAAAACTGTGTTCATGGATGGATTAGCTTTGACACAGAACCACACGCTGGCTTCTGGGTCATAGCGCCAAGTAATGAGTTTCGCAATGGCGGGCCCCCCAAGCAGGATCTCACTTCTCATGTTGGCCCCACCTCTCTTGCGATGTTTGTGAGCACTCACTACGCTGGGACAAGTGTGTCCATTAATTTTGAAAAAGGGGAGACTTACAAGAAGGTGTTTGGCCCTGTATTTGTCTATCTCAACTCTGCTTCCAGAAATAACAATATAGACACACTCTGGTCAGATGCTGTTCGACAGTTCAATGAGGAAGTCAGAAGCTGGCCCTATGATTTCCCTCGATCTCCAGATTTCATTCTACCCAATCAACGAGGAACAGTAAATGGGCGATTGCAAGTCCGAGATTGGTTCAAGAAGGGATGGGGAAACTTCAATGCTAAGTTTGCTTATGTTGGTCTAGCTCTGCCTGGAGAAAATGGATCATGGCAGAGAGAGAGCAAGGGTTATCAATTCTGGACTCAAGCTGATGAGAATGGCTACTTTGAAATCAAATCCGTTATACCAGGGGATTATAATTTGTATGCCTGGGTTCCTGGCTTTATTGGTGATTACAGATACAATACTACAATCACCATCAAACGAGGCGGTGTTATTAAATTGGGTTCACTTGTATATCGTCCTCCAAGGAATGGTCCTACCATATGGGAAATTGGTGTCCCAGATCGCTCAGCCGCAGAGTTATACGTACCAGACCCTGACCCTAAGCTCGTGAACAGATTGTACCAGAATGATGCACGAAACAAGTTTAGACAATATGGGTTGTGGGAACGTTACACTGACTTATATCCAGAGAAAGATCTAGTTTATAATGTTGGCGTGGATAAGCACGACAAGAATTGGTTTTTTGCTCATGTTGCCAGAAGGACAGGAAAGCAGACATACCAACCGACAACATGGCAGATTAAGTTTGAACTTGACGAAGAAACATCATCAGGAAACTACACGTTTCAAGTGGCCTTAGCATCAGCAAATGAAGCCAGGTTGCAGGTTTGGTTCAATGATGGGAGAGACGTTGATCCACACTATGAGACAGCAAGGATGGGAAAAGACAATGCGATAGCGAGGCATGGGATTCATGGACTGTATAGCTTGATCAGTATTGAGGTTGCAAGTGATCGATTTAAGAAGGGAAACAATATTATCTATCTGAAGCAGTCAGAAGCCTCGGACTCATTTCAGGGTGTTTTGTATGATTATCTACGTTTAGAAAGACCTCCCACAGGTGGAAGGATGTGA 2043 0.4376 MKRSNSFMWWFGVILQLCFMLFSSCSEGSTSIRRALLKNDLTPASSSPAVKLDENHNQVVIDNGIVQVTLSKPEGYVLAISYNGIDNVLEAKNKDHNRGYLDVVWGNDDGVFQKIEGTKFSVIEKTEDQVEVSFLRQWTHSMDGSVPIKIDMRYIMRRGNSGYYSYAIFERPEGFPAAKVFQIRLVYKLRQDKFHYMAISRQRQRVMPTAEDRINGQELAYPEAVLLTTAKNPRIRGEVDDKYQYSAENKENCVHGWISFDTEPHAGFWVIAPSNEFRNGGPPKQDLTSHVGPTSLAMFVSTHYAGTSVSINFEKGETYKKVFGPVFVYLNSASRNNNIDTLWSDAVRQFNEEVRSWPYDFPRSPDFILPNQRGTVNGRLQVRDWFKKGWGNFNAKFAYVGLALPGENGSWQRESKGYQFWTQADENGYFEIKSVIPGDYNLYAWVPGFIGDYRYNTTITIKRGGVIKLGSLVYRPPRNGPTIWEIGVPDRSAAELYVPDPDPKLVNRLYQNDARNKFRQYGLWERYTDLYPEKDLVYNVGVDKHDKNWFFAHVARRTGKQTYQPTTWQIKFELDEETSSGNYTFQVALASANEARLQVWFNDGRDVDPHYETARMGKDNAIARHGIHGLYSLISIEVASDRFKKGNNIIYLKQSEASDSFQGVLYDYLRLERPPTGGRM 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3612g00002 680 Gene3D - 370 469 - -
Pral3612g00002 680 Pfam Polysaccharide lyase family 4, domain II 397 468 IPR029413 -
Pral3612g00002 680 SUPERFAMILY Galactose mutarotase-like 52 345 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral3612g00002 680 SUPERFAMILY Galactose-binding domain-like 479 672 IPR008979 -
Pral3612g00002 680 Pfam Rhamnogalacturonate lyase family 45 239 IPR010325 -
Pral3612g00002 680 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 675 - -
Pral3612g00002 680 CDD RGL4_N 50 334 - -
Pral3612g00002 680 Pfam Polysaccharide lyase family 4, domain III 482 671 IPR029411 -
Pral3612g00002 680 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Pral3612g00002 680 CDD RGL4_C 484 672 - -
Pral3612g00002 680 Gene3D - 479 672 - -
Pral3612g00002 680 CDD RGL4_M 372 472 IPR029413 -
Pral3612g00002 680 SUPERFAMILY Starch-binding domain-like 369 470 IPR013784 GO:0030246
Pral3612g00002 680 FunFam Rhamnogalacturonate lyase B 370 469 - -
Pral3612g00002 680 Gene3D - 49 348 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3612g00002 Pral-Chr3612 9589 15620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3612g00002 46 676 Polysaccharide Lyase AT1G09910 53.459 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3612g00002 K18195 - gmx:100776664 881.322