Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3611g00004 ATGGATGCGCAGATGTTTGTGAGCACTCACTACGCTGGGACAAGTGTGTCCATTAATTTTGAAAAAGGGGAGACTTACAAGAAGGTGTTTGGCCCTGTATTTGTCTATCTCAACTCTGCTTCCAGAAATAACAATATAGACACACTCTGGTCAGATGCTGTTCGACAGTTCAATGAGGAAGTCAGAAGCTGGCCCTATGATTTCCCTCGATCTCCAGATTTCATTCTACCCAATCAACGAGGAACAGTTGCTTATGTTGGTCTAGCTCTGCCTGGAGAAAATGGATCATGGCAGAGAGAGAGCAAGGGTTATCAATTCTGGACTCAAGCTGATGAGAATGGCTACTTTGAAATCAAATCCGTTATACCAGGGGATTATAATTTGTATGCCTGGGTTCCTGGCTTTATTGGTGATTACAGATACAATACTACAATCACCATCAAACGAGGCGGTGTTATTAAATTGGGTTCACTTGTATATCGTCCTCCAAGGAATGGTCCTACCATATGGGAAATTGGTGTCCCAGATCGCTCAGCCGCAGAGTTATACGTACCAGACCCTGACCCTAAGCTCGTGAACAGATTGTACCAGAATGATGCACGAAACAAGTTTAGACAATATGGGTTGTGGGAACGTTACACTGACTTATATCCAGAGAAAGATCTAGTTTATAATGTTGGCGTGGATAAGCACGACAAGAATTGGTTTTTTGCTCATGTTGCCAGAAGGACAGGAAAGCAGACATACCAACCGACAACATGGCAGATTAAGTTTGAACTTGACGAAGAAACATCATCAGGAAACTACACGTTTCAAGTGGCCTTAGCATCAGCAAATGAAGCCAGGTTGCAGGTTTGGTTCAATGATGGGAGAGACGTTGATCCACACTATGAGACAGCAAGGATGGGAAAAGACAATGCGATAGCGAGGCATGGGATTCATGGACTGTATAGCTTGATCAGTATTGAGGTTGCAAGTGATCGATTTAAGAAGGGAAACAATATTATCTATCTGAAGCAGTCAGAAGCCTCGGACTCATTTCAGGGTGTTTTGTATGATTATCTACGTTTAGAAAGACCTCCCACAGGTGGAAGGATGTGA 1101 0.4323 MDAQMFVSTHYAGTSVSINFEKGETYKKVFGPVFVYLNSASRNNNIDTLWSDAVRQFNEEVRSWPYDFPRSPDFILPNQRGTVAYVGLALPGENGSWQRESKGYQFWTQADENGYFEIKSVIPGDYNLYAWVPGFIGDYRYNTTITIKRGGVIKLGSLVYRPPRNGPTIWEIGVPDRSAAELYVPDPDPKLVNRLYQNDARNKFRQYGLWERYTDLYPEKDLVYNVGVDKHDKNWFFAHVARRTGKQTYQPTTWQIKFELDEETSSGNYTFQVALASANEARLQVWFNDGRDVDPHYETARMGKDNAIARHGIHGLYSLISIEVASDRFKKGNNIIYLKQSEASDSFQGVLYDYLRLERPPTGGRM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3611g00004 366 SUPERFAMILY Galactose-binding domain-like 165 358 IPR008979 -
Pral3611g00004 366 CDD RGL4_C 170 358 - -
Pral3611g00004 366 Pfam Polysaccharide lyase family 4, domain II 83 154 IPR029413 -
Pral3611g00004 366 SUPERFAMILY Starch-binding domain-like 97 156 IPR013784 GO:0030246
Pral3611g00004 366 Gene3D - 165 358 - -
Pral3611g00004 366 Gene3D - 78 155 - -
Pral3611g00004 366 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 361 - -
Pral3611g00004 366 Pfam Polysaccharide lyase family 4, domain III 168 357 IPR029411 -
Pral3611g00004 366 CDD RGL4_M 79 158 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3611g00004 Pral-Chr3611 27870 29738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3611g00004 5 360 Polysaccharide Lyase AT4G37950 54.881 3.17e-140 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3611g00004 K18195 - gmx:100791732 509.22