Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral360g00004 ATGGGGACGGAGAGTCCGGTGAATTTCACTTACATGGGAAGGAGTATCAGCGAATTGACCACCAATGATCATTCCTCTTCTGCTTTCAGCGATTGCAACAGTGACAGATCCGGTGAATTTCCGACGGCCTCTTCCCAAAGGCGAGACCTCCTGATTGCTTGTGCGTCCGACAATTCCGATGATTTGATCGTTCAGCTGGTGAATGATCTCCAGTCTTCTTCGATCGATGACCAGAAGCAGGCCGCCATGGAGATTAGACTGCTGGCCAAGAACAACCCGGAAAACCGTCTTAAAATCGCCAAATCAGGCGCTGTCAAGCCGTTGGTTTCGCTTATGTCTTCGCCTGACCTTCAACTCCAAGAGTACGGCGTCACCACGATTTTGAATCTCTCACTGTGCGATGAGAATAAGGAGCTTATAGTTTCTTCGGGAGCCATAAAGCCTCTGGTTCGAGCACTCAAGACAGGGACGTCAACGGCAAAGGAGAACGCGGCATGTGCCTTGCTTCGCCTCTCGCATATAGAACAGAACAAGGTGGCAATCGGAAAGTGGGGAGCCATTCCCCTGCTAGTGAAACTTCTCGAGAGCGGCAGTTTCCGAGGGAAAAAGGATGCCTCGACGGCGTTGTACTCGCTCTGTTCGGTGAAGGAGAATAAAATAAGGGCGGTGCAAGCCGGAATAATGAGGCCGTTAGTGGAATTAATGGCTGATTTTGGATCAAACATGGTGGATAAGTCAGCGTACGTGTTGAGCGTGCTGGTATCGGTGCCGGAGGCGAGAACGGCGTTGGTGGAGGAAGGAGGAATTCCGGTGCTGGTGGAAATCCTGGAGGTCGGGTCGCAGAGACAGAAACAAATAGCAGTGGTTATACTATTACAGCTTTGCGAGAGCAACGCCACCCACCGCACTATGGTGGCTCGCGAAGGAGCCATACCACCGCTGGTGGCTCTGTCGCAGTCCAGCGCCACTAGCTCCAAGCATAAGGCGGAGACACTAATAGAGCTTCTGCGGCAACCAAGATCCGGCACCGCCGCTGATTGTGCGTCGGAGGTCTCAGCCTAA 1062 0.5273 MGTESPVNFTYMGRSISELTTNDHSSSAFSDCNSDRSGEFPTASSQRRDLLIACASDNSDDLIVQLVNDLQSSSIDDQKQAAMEIRLLAKNNPENRLKIAKSGAVKPLVSLMSSPDLQLQEYGVTTILNLSLCDENKELIVSSGAIKPLVRALKTGTSTAKENAACALLRLSHIEQNKVAIGKWGAIPLLVKLLESGSFRGKKDASTALYSLCSVKENKIRAVQAGIMRPLVELMADFGSNMVDKSAYVLSVLVSVPEARTALVEEGGIPVLVEILEVGSQRQKQIAVVILLQLCESNATHRTMVAREGAIPPLVALSQSSATSSKHKAETLIELLRQPRSGTAADCASEVSA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral360g00004 353 SMART arm_5 92 132 IPR000225 GO:0005515
Pral360g00004 353 SMART arm_5 174 214 IPR000225 GO:0005515
Pral360g00004 353 SMART arm_5 133 173 IPR000225 GO:0005515
Pral360g00004 353 SMART arm_5 298 337 IPR000225 GO:0005515
Pral360g00004 353 SMART arm_5 215 255 IPR000225 GO:0005515
Pral360g00004 353 SMART arm_5 256 296 IPR000225 GO:0005515
Pral360g00004 353 PANTHER U BOX DOMAIN-CONTAINING 62 337 - -
Pral360g00004 353 FunFam RING-type E3 ubiquitin transferase 52 342 - -
Pral360g00004 353 SUPERFAMILY ARM repeat 60 329 IPR016024 -
Pral360g00004 353 Gene3D - 53 252 IPR011989 -
Pral360g00004 353 Gene3D - 253 347 IPR011989 -
Pral360g00004 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Pral360g00004 353 MobiDBLite consensus disorder prediction 22 42 - -
Pral360g00004 353 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
Pral360g00004 353 Pfam Armadillo/beta-catenin-like repeat 176 214 IPR000225 GO:0005515
Pral360g00004 353 Pfam Armadillo/beta-catenin-like repeat 92 131 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral360g00004 Pral-Chr360 9520 11275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral360g00004 27 345 U-box Gene Family AT2G23140 47.112 3.53e-83 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral360g00004 - - qsa:O6P43_015993 541.962