Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3609g00001 ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCAACAACGCTACAGCGAGGCAAGTGACATTCTCCAAGCGACGCAGAGGCCTCTTCAAAAAGGCTGAGGAGCTTTCTGTCCTCTGTGATGCGGATGTTGGCCTCATAGTCTTCTCCTCAACTGGGAAGCTCTTTGAGTACTTCAGCACAAGCAAAAAGGAACTACTCGGCAAATATCATCTGCAGTCGAAGAACTTAACAAAACCAGGACCACCGTCTCTTGAATTCCAGTTGAAACATAGTTACACCAGCTTGAGCAAGGAAGTTGCTGAGAAGAGCCGTCAACTTAGACAGATGAGAGGAGAAGATCTGCAAGGTTTGAACATCCGGGAATTGCAGCAACTAGAGAGGTCTCTCGAGTCCGGATGGGGCCGTGTAATAGAAAAGAAGGAAGAGAAGATAATGACTGAGATCAGTGATCTCAAGAGAAAGGGAATGGAGCTGATGGAAGAGAATGAGCTGTTAAAGCGTCAAGTGGAGCAATTATCTGATGGTAACAGGCTAGGTGGGGCCGAGTCTGACATCGTCAATAATGAGGAAGGTCAGTCATCAGAATCTATCACTGTCACGTGCAACTCCTCGGGACCCCCTCAAGACTGCGACAGCTCAGACACATCGCTCAAGCTGGGGTTACCATATGCTGGCTGA 678 0.4794 MAREKIQIKKINNATARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFEYFSTSKKELLGKYHLQSKNLTKPGPPSLEFQLKHSYTSLSKEVAEKSRQLRQMRGEDLQGLNIRELQQLERSLESGWGRVIEKKEEKIMTEISDLKRKGMELMEENELLKRQVEQLSDGNRLGGAESDIVNNEEGQSSESITVTCNSSGPPQDCDSSDTSLKLGLPYAG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3609g00001 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral3609g00001 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral3609g00001 225 FunFam Transcription factor, MADS-box 13 83 - -
Pral3609g00001 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Pral3609g00001 225 Coils Coil 92 112 - -
Pral3609g00001 225 Coils Coil 148 168 - -
Pral3609g00001 225 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3609g00001 225 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Pral3609g00001 225 MobiDBLite consensus disorder prediction 186 215 - -
Pral3609g00001 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral3609g00001 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3609g00001 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3609g00001 225 Pfam K-box region 87 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3609g00001 225 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pral3609g00001 225 MobiDBLite consensus disorder prediction 172 225 - -
Pral3609g00001 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral3609g00001 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral3609g00001 225 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3609g00001 Pral-Chr3609 2791 8055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3609g00001 1 225 MADS-box Gene Family AT2G22540 64.583 3.56e-99 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3609g00001 K-box 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3609g00001 - - gmx:100789126 311.227