Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3600g00006 ATGGATTGCATCAAAGAACGGTACTTTGAAACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGTCGAGGAACATGTTCCTGTAAAGACTGCTTGGCAAGTCAATATAAAGACAATGAAAGTAAGGAATATTTGGCGTGTAAAAGCAGAGTGGACAGAATTTTGTGTTTCCACTATATGATCTGCATGCTTCTTCCTGTATTAAAACAAATCAGTGAAGACCATAATATTGAACTAGAAGCAGAAGTGAAAAGTAAAGAGAAAAGAACCTCTGATATTCAAATCAAGCAGTTTGAGTCTTGCTGTAATGACCAAAACTGCTGGATACCGAATAAACTGAAAGATGGCATTGCCAGTGAAAACCACGTTTTGGATGAGGTCATTTCCAATGGCAATTTGACTGCTACTTCATCACCAGATGGCACAATTTGTAATGGTTCTGGCAATATATCTTGTTCCCCCAAAGAGCTTGGTGGCTGTGGTGATAGCCTCCTTGATTTGAGATGTCTTTTTCCTGTAAGTTTGATCAAAGAAATGAAAACAAAAGCTGAAGAAATATCTTGCTGCTATGACTTTCCTGAATCATTGGATAAAAGTTCAAGCTGCTCGCTTTGTCTCAATTCTGATAATAAGATTGATAGAGACAAACAATGGCAAGAAGCAGCTCTAAGAGAAGATTCCGATGATAATTGCTTGTTTTATCCCACAGTTTTGGACATCAGTCGTGATAATTTTGAACACTTTCAGAAGCACTGGAGAAAAGGCCATCCAGTGGTAGTGCGTGATGTTCTCCAAAGTAAATCAAATCATAGCTGGGATCCACTGGCCATGTTCTGTGCTTATCTTGAGCAGAGTATCACAAGATATCAGAATGATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTAGAAATTAACATTAGGCAGTATTTTTCTGGGTCTCTAAGATGTCAACCACAGAAAAATAATTGGCATTATATGCTGAAATTGAAGGGCTGGCTTTCTTCCCAACTATTCAAAGAACAATTTCCGACTCATTATTATCAAGTAATTGCTGCTCTACCACTTCAAGAATACATGAATCCCATGTCTGGTATTCTGAATTTAGCAGCAAATTTGCCACAAGGGAGTGTAAAACATGACATAGGGCCATTTGTCTATATGTCATATGGCTGTGCTGATGAACAAGTTGATTCTGTGACAAAACTCTGTTACGACTCATATGATGTGGTTAATATCATGGCGCATTCAACAGATGTCCCTCTCTCTACAGAACAACTTGATAAAATAAGAAAGTTATTGAGAAAGCACCGAAATCTGTGTCAAAGGGAGTCTCCCAAAATTATTACTGGGAAGATAATGGGACAAAGTTTGAAAGAAAATTCATTATTGCATGCTGAAGATAAGGAACAAAATGGAGTGCAGAGTATGGTTAGAGGGCAAATGAATTTCTTCCGGAGGGTCAATAGAACAACATTAATCTCTACAGAGGCAGGAACAGCTAGTCCGAGTACGGACAGCAATATTTCCCAGGGTGGAGAATGTGATTCAGATACAGATTCTGATTCTGATTTTGAATCCAATGTACTTCACGGGACAACCCAGAACACTCCATTGTCTACGCTTGATAATCCCAGATATTCCTGTGATAGCGCAAGTAATGGTAGAAATAAAAACCTAAGTGATTATTCTGGTGCCCAGTGGGATGTATTTCGCAGACAAGACGTTCCAAAACTAATAGAATACCTTGAAAGACATTGTATTGAATTTGCTGATACCCAGAACCATAAAAATAAGATGATTCACCCACTTCTAGATCAGATCTTCTTTCTTGACAGTACTCACAAAATGAGGCTTAAAGAGGAGTTTGAAATTGAACCGTGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGCCCATACCAGATAAGGAATCCAAAGTGTTGTGTTCATGTGACGCTTGAATTTGTGTCCCCTGAAAATGTTCCTGAGTGTATGGAGTTGATTGATGAAGTCCGTCTACCTCCTGAAGGACATAAAGCAAAAGTGGATAAGCTGGAGATGGAGAAAATGGCCCTTTATAGCATGAGAACAGCAATAAAAGAAATAGGAGATCTTACATGTAAAAAGTGA 2154 0.3867 MDCIKERYFETQNEVKMACPVCRGTCSCKDCLASQYKDNESKEYLACKSRVDRILCFHYMICMLLPVLKQISEDHNIELEAEVKSKEKRTSDIQIKQFESCCNDQNCWIPNKLKDGIASENHVLDEVISNGNLTATSSPDGTICNGSGNISCSPKELGGCGDSLLDLRCLFPVSLIKEMKTKAEEISCCYDFPESLDKSSSCSLCLNSDNKIDRDKQWQEAALREDSDDNCLFYPTVLDISRDNFEHFQKHWRKGHPVVVRDVLQSKSNHSWDPLAMFCAYLEQSITRYQNDKDLLEACLDWCEVEINIRQYFSGSLRCQPQKNNWHYMLKLKGWLSSQLFKEQFPTHYYQVIAALPLQEYMNPMSGILNLAANLPQGSVKHDIGPFVYMSYGCADEQVDSVTKLCYDSYDVVNIMAHSTDVPLSTEQLDKIRKLLRKHRNLCQRESPKIITGKIMGQSLKENSLLHAEDKEQNGVQSMVRGQMNFFRRVNRTTLISTEAGTASPSTDSNISQGGECDSDTDSDSDFESNVLHGTTQNTPLSTLDNPRYSCDSASNGRNKNLSDYSGAQWDVFRRQDVPKLIEYLERHCIEFADTQNHKNKMIHPLLDQIFFLDSTHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNPKCCVHVTLEFVSPENVPECMELIDEVRLPPEGHKAKVDKLEMEKMALYSMRTAIKEIGDLTCKK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3600g00006 717 Coils Coil 69 89 - -
Pral3600g00006 717 MobiDBLite consensus disorder prediction 497 546 - -
Pral3600g00006 717 SMART cupin_9 345 680 IPR003347 -
Pral3600g00006 717 Gene3D Cupin 236 689 - -
Pral3600g00006 717 Pfam JmjC domain, hydroxylase 565 663 IPR003347 -
Pral3600g00006 717 ProSiteProfiles JmjC domain profile. 364 680 IPR003347 -
Pral3600g00006 717 SUPERFAMILY Clavaminate synthase-like 243 700 - -
Pral3600g00006 717 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 135 716 IPR045109 GO:0032454|GO:0033169
Pral3600g00006 717 MobiDBLite consensus disorder prediction 497 518 - -
Pral3600g00006 717 MobiDBLite consensus disorder prediction 528 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3600g00006 Pral-Chr3600 234296 239116 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral3600g00006 JmjC 1.1e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3600g00006 K15601 - gmx:100799234 934.48