Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3587g00020 ATGCCAAAGAAGAAGCACGGGGACCACGACAGCGACGAAGAAGACATCTTCTATTACCGCTATGCTTCCTCTTCTGCTTCTTCAGCACCTTCCTCAAACACCACCAGAACCCTCAAGACTCACGGTGGCTCTGGTGGGTTAGCTCCCTCTAAATCCACTATCTACGTCTCCAACCTTGACTTCTCCCTCACTAACTCCGACCTCAACACCCTTTTTTCCACCTTCGGAAAGATCGCCCGAGTCACCGTGCTCAAGGACCGAGTCACTCGCCAGAGCCGTGGCGTCGCTTTCATTCAATACGTTTCTCGTGACGATGCACAAAAAGCTGCTCGTGAGATGAACCGCAAAGTTCTCAACGGCAGGACCTTGACTGCTTCCATCGCCGCGGATAATGGCCGGGCTCCGGAATTTATAAAGAAAAGGGTTTATAAGGATAAGAGTCGGTGTTACGAGTGTGGGGAAGGAGGACATTTGTCTTATGAGTGTCCCAGGAATCAGTTAGGGCCCAGGCAGCGTCCGGTTCCCAAGCGCGAACGACATGGCGGTGGCGGTGGCGGCGGGGGCGGGTACCAGCGGGCCGAGGAGGATGATGACGGATCCGATGGTGGGGATCGGTTTGAGGATGATAATTGGGCTTCTATTGTGGATAATGGGGCGGATGAAAGGTTGCTGACGGGTAACGAGAAGGTTGTGGAGAAGAAGAAGGCGAAGAAAGCAAGCTATTTCAGTGATGAGAGTGGTGATGAAGATGATTGA 756 0.5291 MPKKKHGDHDSDEEDIFYYRYASSSASSAPSSNTTRTLKTHGGSGGLAPSKSTIYVSNLDFSLTNSDLNTLFSTFGKIARVTVLKDRVTRQSRGVAFIQYVSRDDAQKAAREMNRKVLNGRTLTASIAADNGRAPEFIKKRVYKDKSRCYECGEGGHLSYECPRNQLGPRQRPVPKRERHGGGGGGGGGYQRAEEDDDGSDGGDRFEDDNWASIVDNGADERLLTGNEKVVEKKKAKKASYFSDESGDEDD 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3587g00020 251 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Pral3587g00020 251 MobiDBLite consensus disorder prediction 191 211 - -
Pral3587g00020 251 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 9 250 IPR044598 GO:0000398|GO:0005689
Pral3587g00020 251 MobiDBLite consensus disorder prediction 23 47 - -
Pral3587g00020 251 MobiDBLite consensus disorder prediction 222 244 - -
Pral3587g00020 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 123 IPR000504 GO:0003723
Pral3587g00020 251 Pfam Zinc knuckle 148 163 IPR001878 GO:0003676|GO:0008270
Pral3587g00020 251 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 136 - -
Pral3587g00020 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Pral3587g00020 251 SUPERFAMILY Retrovirus zinc finger-like domains 134 165 IPR036875 GO:0003676|GO:0008270
Pral3587g00020 251 SUPERFAMILY RNA-binding domain, RBD 49 135 IPR035979 GO:0003676
Pral3587g00020 251 SMART rrm1_1 53 126 IPR000504 GO:0003723
Pral3587g00020 251 CDD RRM_ZCRB1 51 126 IPR034219 -
Pral3587g00020 251 SMART rrm2_1 53 126 IPR003954 GO:0003676
Pral3587g00020 251 MobiDBLite consensus disorder prediction 160 251 - -
Pral3587g00020 251 Gene3D - 28 208 IPR012677 -
Pral3587g00020 251 Gene3D - 139 173 - -
Pral3587g00020 251 ProSiteProfiles Zinc finger CCHC-type profile. 148 164 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3587g00020 Pral-Chr3587 409037 416744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3587g00020 52 128 Eukaryotic Initiation Factors Gene Family AT4G34110 29.870 8.71e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3587g00020 K13154 - qsa:O6P43_008664 337.806