LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3586g00007	TTTCTTGATGTTTTTCTTTTCAGTAAACTGAAGGGTTTGTCTGCAAAAATCTCGTCATGCGCTCCAAGATTTTGCACAGTTTATGCTGTTTCCAAAGGTAGACTGTTTTCTTCACGGCCATCAGACATAGAGATTGATGGAAGCTTAATAGATGACAGCAGTGAAACCAGTTGTTCAACCAATAGCTCATTGAACTCTGCATCCACCTCTCAGATAGACTATGGCTCAGTCAGATCATATGCTCCGACACATTCCTCTTCCCTAGCGGCACAGAGATATCAAGCTCTTTCAACCATTAATCTGACCCGTCAGAGCGCAAAATCTGGTTCAATTGAAAATAACCACTCTAGAAGCCATTCTCTAGACCTTGGCATAGAGCAAACTGCTATATATTCTTCTTCCAAAAACTCAGATATTGACAATGCTTTGAGCCGGGCCTCTAGCTGCAAAAGCAATCTGTCAGATGGTGAATCTTGGAATTATTATCAAAATCCCACCATGGATGCACCACTGGCAACGGTGTCGCCTGATAAGCAGGAAAATTTTTACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGGAATGCCCAAGGAATGCACGTGGTGGCTCAAAGTCAGAATATTTATGCATCACAAATGCTGAACAATCTCAGTAAGAAGAGAACAGGGGAATCTATGAAATTGAAGGGAATTATTGCTAAGGAGAACATGGCCAAAAAATTAATAATAAAGGAGAGAGAGAAATGTGAGGCAGCAGAAAGAGAAGCTGCTTATTTGAAAAGAAGTGCTGAAGAGGAAGCCATTGAAAGAATAGAAGCAGAGAAAAAAGCTGTCGAAGCTGCCAAAAGGAATGAAAATCTAGAGGATGCTCTCAGTGGTTCCACGCCTCATTATAAGAAGATTGCATGGGATGAAATAGTTTCAGCCACCTCATCATTTTCTGAAGAGCTTAGAATTGGAAAGGGAGCTTGTGGAACAGTGTACAGGTGCCATCTGTATCATACTTCTGTGGCGGTAAAAATTCTCCACTCTAATGAGGACCACATTATCAAGCAACTCCAGCAAGAGCTAGAAATACTGAGCAGAATTCGTCATCCAAATTTACTTCTCCTTCTTGGGGCATGCCCTGATCATGGATGCCTTGTGTATGAATACATGGAGAATGGTAGCTTAGAGGACAATTTACTCGGAAATAGATGTAATATCTCGATTCCATGGTTCAAGAGGTACAAAATTGCATGGGAAATAGCCTCTGTTCTTGCCTTTCTTCATAGCTCGAAGCCCAAACCTATCATCCATCGTGATCTGAAACCTGCGAACATCTTGCTAGATGAAAATCTTGTGAGCAAGATTGGCGATATTGGCCTTTCTACATTACTCCATTCAGATACTTTGTCTACAACATTCAAGGACACAGACCCTGTTGGGACGCTCTCCTACATAGATCCTGAGTACCAAAGGACAGGGTCAATATCTCCCAAATCTGATGTTTATGCTTTTGGAATGGTGATCCTCCAATTGTTAACTGCAAAACCAGCTAGAGCACTGGCTCATTTAGTAGAAACAGCAATTGACAAGGGAAACTTAGCAGAAGTGTTGGATCCCAAAGCAGGGAGTTGGCCACTTCAGGAGACTTTGGACTTAGCTCGATTAGGCCTAAGCTGCGCAGAACTTCGGCGTAGAGACAGGCCTGATTTGAAAGATCATGTACTCCCCATGCTGGAGAGATTAAAAGAAGTCGCTGATAAGGCTCAGCATTCTGCCACAATTATTACTGTTAAATCGAGACCTCCTAATCACTTTATCTGCCCAATACTTCAGGACGTGATGGATAATCCTTGTGTTGCTGCTGATGGTTATACTTATGATTACAAAGCAATTGTAACATGGCTGCAAAGAAATGACAAATCACCAATGACAAATATGCCATTGCCTCATAAGAATCTGATTCCGAATTACACGCTTCTATCTGCTATTATGGAGTGGAAATCCAAAGAAAACTGA	2004	0.4162	FLDVFLFSKLKGLSAKISSCAPRFCTVYAVSKGRLFSSRPSDIEIDGSLIDDSSETSCSTNSSLNSASTSQIDYGSVRSYAPTHSSSLAAQRYQALSTINLTRQSAKSGSIENNHSRSHSLDLGIEQTAIYSSSKNSDIDNALSRASSCKSNLSDGESWNYYQNPTMDAPLATVSPDKQENFYLELEKLRIELRNAQGMHVVAQSQNIYASQMLNNLSKKRTGESMKLKGIIAKENMAKKLIIKEREKCEAAEREAAYLKRSAEEEAIERIEAEKKAVEAAKRNENLEDALSGSTPHYKKIAWDEIVSATSSFSEELRIGKGACGTVYRCHLYHTSVAVKILHSNEDHIIKQLQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDNLLGNRCNISIPWFKRYKIAWEIASVLAFLHSSKPKPIIHRDLKPANILLDENLVSKIGDIGLSTLLHSDTLSTTFKDTDPVGTLSYIDPEYQRTGSISPKSDVYAFGMVILQLLTAKPARALAHLVETAIDKGNLAEVLDPKAGSWPLQETLDLARLGLSCAELRRRDRPDLKDHVLPMLERLKEVADKAQHSATIITVKSRPPNHFICPILQDVMDNPCVAADGYTYDYKAIVTWLQRNDKSPMTNMPLPHKNLIPNYTLLSAIMEWKSKEN	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3586g00007	667	SUPERFAMILY	RING/U-box	595	665	-	-
	Pral3586g00007	667	Gene3D	Transferase(Phosphotransferase) domain 1	386	596	-	-
	Pral3586g00007	667	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	431	443	IPR008271	GO:0004672\|GO:0006468
	Pral3586g00007	667	PANTHER	OS02G0152300 PROTEIN	14	661	-	-
	Pral3586g00007	667	Pfam	Protein kinase domain	315	546	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3586g00007	667	SMART	serkin_6	313	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3586g00007	667	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	597	667	IPR013083	-
	Pral3586g00007	667	Coils	Coil	254	290	-	-
	Pral3586g00007	667	ProSiteProfiles	Protein kinase domain profile.	313	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3586g00007	667	SUPERFAMILY	Protein kinase-like (PK-like)	296	568	IPR011009	-
	Pral3586g00007	667	Gene3D	Phosphorylase Kinase; domain 1	291	385	-	-
	Pral3586g00007	667	ProSiteProfiles	U-box domain profile.	596	667	IPR003613	GO:0004842\|GO:0016567
	Pral3586g00007	667	SMART	Ubox_2	600	662	IPR003613	GO:0004842\|GO:0016567
	Pral3586g00007	667	Pfam	U-box domain	598	665	IPR003613	GO:0004842\|GO:0016567
	Pral3586g00007	667	CDD	RING-Ubox_WDSUB1-like	598	652	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3586g00007	Pral-Chr3586	78354	82352	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3586g00007	6	664	U-box Gene Family	AT4G25160	48.011	0.0	631

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Pral3586g00007		Pkinase	8.8e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3586g00007	-		-	gmx:100818628	862.062