Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3579g00010 ATGGCTTCTTCAAGTCCTAACAAGGGAACTAATAAGTATGAATCACTTTCACCTCTTCCACCTACCATCCGTCCGCATGTGGAATCAGAAAAAGCATACTTGCCTATCAAGAAAACATCAGATAGAAAACTCTTGCCTATGGCCAGGCGTGGTCTTGGATCCAAGGGACAAAAGATCCAGCTTACCACTAACCATTTTAAAGTTAGCCTGGCCAAGAAAGATGGCTTCTTCTATCACTATACTGTTGCTCTCTTTTATGAAGATGGACGCCCTGTGGAAGCCAGGGGTTTTGGGAGAAGGGTCATAGATAAAGTTTATGAGACCTATGCTTCTGAGCTGCAAAGCAAGGGCTTTGCATATGATGGAGAGAAAGCATTATTTACTCTTGGTTCGCTCCCACGTAATAAGCTTGAATTCGTGGTGGTGCTAGATGAAATTTCATCAAACAAGGTTGGAAGGAATGGAAGCCCTGACAACACAGAGGGAACTGATAAGAAGAGAATGAGGCGTCCGTATCAATCCAAGACAATCAAGGTGGAGATCAGTTATGCCAGAAAAATCCCTATGCAGGAAATTGTTGATGTATTAAGCGGTCTAGAATCTGATCATCATCAAGAAGGATTAAGGGTTCTGGATATCATACCAAGGCAGCATGCAGCAAAGCAGGGCTGCCTACTTGTGCGTCAATCATTCTTCCATGATAGAGTAGAAAATTACAGAGACATTGGAGGTGGTGTTCAAGGTTGCCGAGGCTTCCATTCGAGTTTCCGAGCCACTCAAGGGGGTCTGTCTCTAAACGTTGATATGTCAACAACATTGCTTCTAAAGCCTGGTCCAGTGTTGGAGTTCCTCTGCATGAATCAAAATGTTAATCGTACCAATTTGATTGATTGGACCAAGGCAAAAAGGATGTTGAAGAACCTGCGAATCAAGGCTAACAATATGGAGTACAAAATCACCGGATTGAGTGATAAGCCCTGTAGAGATCAGACGTTTTCCTTGAAGCAAGGAAGAGACGCAAATGGTGAGGTGAAGTCAATTGAAATAACAGTTGCTGCATATTTTGAACGCTATAAAGGCATCAGATTGCGTGACTCAGCTAATTTACCATGCATCAATGTTGGCAAACCAAAGAAACCTTCTTATTTTCCAATAGAGTTCTGTACTTTGGTTTCATTGCAACGCTACACTAAGGCCCTTACCAGTTTGCAAAGAGCTTCACTTGTGGAAGTGTCAAGGCAAAAGCCCCATGAACGAAAGGCATCTCTATCAAATTCACTGAAAAACTGCAGATATAATGATGATCCTATGCTTCGTTCTTCTGGAATCACCATTGACTCTGAGTTTACAAAAGTTGAAGGTCGTCTTCTACCAGCTCCAAAGCTTAAACTTGGGAATGGGGAGGACTTCACTCCTAGAAATGGGAGGTGGAATTTTAATAATAAGAAACTTTATCAACCTGTGGTGATTGAACGTTGGGCCATAGTCAACTTCTCTGCTCGTTGTAATATTAACATCCTGATCGAAGGCTTGCAGAGATGCGCAGAAAGGAAGGGGATGATCCTCAAGGAGCCATTTAGAGTGTTTAAAGAGGATCTCCAAATGAGTCGCAAGCCGGCCACTGTCAGGGTAGAGGAATTGTATGCAGTTGTGATGAGTCAGTTGCCTGGGTTACCCCAACTTCTATTGTGCATTCTACCAGAGAAGAAGAATTCTGATATCTATGGTCCTTGGAAAAGAATAAATCTTGCTATTGATGGTAAAGGTAAAGGGGTTGTTACACAATGTATTGCCCCGACAAAAATGAATGATCAGTACTTTACCAATGTTCTACTGAAGATTAATGCCAAGCTTGGTGGGATGAATTCCTTTTTGGCAATAGAGCATTCACGTTCTATACCTTTAGTTTCAAATGTGCCTACCTTAATTCTTGGCATGGACGTCTCACATGGCTCTCCAGGTCGAGCAGATGTACCGTCTATTGCTGCGGTTGTCAGCTCAAGGTGTTGGCCTCAAATTTCACGTTATAGAGCATCAGTTCGTGCCCAATCACCAAAGGTTGAAATGATTGCTAATCTGTTCAAACCTATTGCTCATAATAAGGATGACGGTATTATCAGAGAGCTGCTTGATGACTTCATGAATACTTCAGAAAGGAGGCCTGAACATATTGTCATATTCAGGGATGGAGTCAGTGAATCACAATTCAATCAGGTGTTGAACATTGAGTTCGAACAAATCATTCAGGCATGCAAGCATTTTCAAGAAACATGGGATCCAAAGTTTACTGTGATTATTGCCCAAAAAAATCATCACACTAAGTTCTTTCAGGCCGATGCTCAAGAAAATGTTCCTCCAGGAACTATCATTGATAATAGAATCTGTCACCCTAAGAACAACGATTTCTACATGTGTGCTCATGCAGGGATGATTGGAACAAGCCGGCCTACTCATTACCATGTACTACATGATGAGATTGGTTTCTCTGCTGATGATTTGCAAGAACTTGTGCACTCTCTTTGTTATGTATATCAGAGAAGCACAACAGCTATATCAGTAGTTGCTCCAATCTGTTATGCTCACTTAGCAGCAGCACAAGTGGCACAGTTTATCAAGTTTGATGAATTTTCAGACTCTTCTTCAAGCCATGGTGGACTCACTTCTGTTAGCACACCTCAAGTCCAAGAGTTGCCTCGTCTTCATGAACGAGTCCGTGGCTCGATGTTCTTCTGTTAG 2736 0.4214 MASSSPNKGTNKYESLSPLPPTIRPHVESEKAYLPIKKTSDRKLLPMARRGLGSKGQKIQLTTNHFKVSLAKKDGFFYHYTVALFYEDGRPVEARGFGRRVIDKVYETYASELQSKGFAYDGEKALFTLGSLPRNKLEFVVVLDEISSNKVGRNGSPDNTEGTDKKRMRRPYQSKTIKVEISYARKIPMQEIVDVLSGLESDHHQEGLRVLDIIPRQHAAKQGCLLVRQSFFHDRVENYRDIGGGVQGCRGFHSSFRATQGGLSLNVDMSTTLLLKPGPVLEFLCMNQNVNRTNLIDWTKAKRMLKNLRIKANNMEYKITGLSDKPCRDQTFSLKQGRDANGEVKSIEITVAAYFERYKGIRLRDSANLPCINVGKPKKPSYFPIEFCTLVSLQRYTKALTSLQRASLVEVSRQKPHERKASLSNSLKNCRYNDDPMLRSSGITIDSEFTKVEGRLLPAPKLKLGNGEDFTPRNGRWNFNNKKLYQPVVIERWAIVNFSARCNINILIEGLQRCAERKGMILKEPFRVFKEDLQMSRKPATVRVEELYAVVMSQLPGLPQLLLCILPEKKNSDIYGPWKRINLAIDGKGKGVVTQCIAPTKMNDQYFTNVLLKINAKLGGMNSFLAIEHSRSIPLVSNVPTLILGMDVSHGSPGRADVPSIAAVVSSRCWPQISRYRASVRAQSPKVEMIANLFKPIAHNKDDGIIRELLDDFMNTSERRPEHIVIFRDGVSESQFNQVLNIEFEQIIQACKHFQETWDPKFTVIIAQKNHHTKFFQADAQENVPPGTIIDNRICHPKNNDFYMCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLCYVYQRSTTAISVVAPICYAHLAAAQVAQFIKFDEFSDSSSSHGGLTSVSTPQVQELPRLHERVRGSMFFC 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3579g00010 911 ProSiteProfiles PAZ domain profile. 317 392 IPR003100 GO:0005515
Pral3579g00010 911 CDD PAZ_argonaute_like 277 391 - -
Pral3579g00010 911 Gene3D - 632 911 IPR036397 GO:0003676
Pral3579g00010 911 MobiDBLite consensus disorder prediction 1 17 - -
Pral3579g00010 911 Pfam PAZ domain 282 408 IPR003100 GO:0005515
Pral3579g00010 911 SMART DUF1785_2 225 277 IPR014811 -
Pral3579g00010 911 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 43 874 - -
Pral3579g00010 911 Pfam N-terminal domain of argonaute 57 214 IPR032474 -
Pral3579g00010 911 FunFam Protein argonaute 3 633 911 - -
Pral3579g00010 911 Gene3D paz domain 271 396 - -
Pral3579g00010 911 SMART Piwi_a_2 561 872 IPR003165 GO:0003676
Pral3579g00010 911 SUPERFAMILY Ribonuclease H-like 559 870 IPR012337 -
Pral3579g00010 911 MobiDBLite consensus disorder prediction 1 24 - -
Pral3579g00010 911 Pfam Mid domain of argonaute 471 527 IPR032473 -
Pral3579g00010 911 Pfam Piwi domain 562 872 IPR003165 GO:0003676
Pral3579g00010 911 Pfam Argonaute linker 2 domain 418 463 IPR032472 -
Pral3579g00010 911 Pfam Argonaute linker 1 domain 227 273 IPR014811 -
Pral3579g00010 911 SUPERFAMILY PAZ domain 272 433 IPR036085 GO:0005515
Pral3579g00010 911 Coils Coil 305 325 - -
Pral3579g00010 911 ProSiteProfiles Piwi domain profile. 561 872 IPR003165 GO:0003676
Pral3579g00010 911 Gene3D - 456 626 - -
Pral3579g00010 911 CDD Piwi_ago-like 436 871 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3579g00010 Pral-Chr3579 98628 104602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3579g00010 49 911 Eukaryotic Initiation Factors Gene Family AT5G43810 35.477 2.12e-167 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3579g00010 K11593 - pvy:116126885 1214.91