Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3579g00009 ATGAAGAAAACATCAGATAGAAAACTCTTGCCCATGGCCAGGCGTGGTCTTGGATCCAAGGGACGAAAGATTCAGCTTATCACTAACCATTTTAAAGTTAGCCTGGCCAAGAAAGATGGCTGCTTCTATCACTATACTGTTGCTGTCTTTTATAAAGATGGGCGCCCTGTGGAAGCCAGGGGTATCGGAAGGAGAGTCATAGACAAAGTTTATGAGACCTATGCTTCTGAGCTGCCAGGCAAGGACTTTGCATATGATGGAGAGAAAGCCTTATTCACTCTTGGTTCACTTCCACGTGACAAGCTTGAATACATGGTCTTGCTAGATCAAATTTCATCAAACAAGGTTGGAAGGAATGGAAGCCCTGACAACACAGACGGAAATCAATCCAAGACATTCAAGGTGGAGATCACTTATGCTAAAAAAATCCGTATGCAAGAAATTGTTGATGCATTGCTCGGTCAAGAATCTGACCACCAAGAAGCAATAAGGGTTCTGGACATCATATTAAGGCAGCATGCAGCAAAGCGGGGCTGTCTACTTGTGCGTCAATCATTCTTCCATGACAAAGTAGAAAATTACAGAGACATTGGAGGTGGTGTTCAAGGTTGCCGAGGCTTCCATTCGAGTTTCCGAGCCACTCAAGGGGGTCTGTCTCTAAACGTTGATATGTCAACAACATTGCTTCTAAAGCCTGGTCCATTGTTGGAGTTCCTCCGCATGAACGAAAATGTTAATCGTACTAATTTGATTGATTGGACTAAGGCGAAAAGGATGTTGAAGAACTTGCGAATCAAGGCTAACAATATGGAGTACAAAATCACCGGATTGAGTGATAAGCCCTGCAAAGATCAGACGTTTTCCTGGAAGCGAGGAAGAGACGCAAATGGTGAGGTGAAATCAATTGAAATAACAGTTGCTGCATATTTTGAACGCTATAAAGGCATCAGATTGCGTGATTCAGCTAATTTACCATGCATCAATGTTGGCAAACCAAAGAAACCTTGTTATTTTCCAATAGAGCTCTGTACTTTGGTTTCATTGCAACGCTACACTAAGGCCCTTACCAGTTCGCAAAGAGCTTCACTAGTGAGAGTGTCAAGACAAGAGCCCCATGAACGAAAGGCGTCTGTATCAAATTCACTGAGAAACTGCAGATATAACGATGATCATATGCTTCGTTCTTCTGGTATTACCATTGGCTCCGAGTTTACAAAAGTTGAAGGTCGTATTCTGCAAGCTCCAACGCTTAGGGTTGGGAATGACAAGGACTTCACTCCTGAAAATGGGAGGTGGAATTTCATTGATAAGCAACTTTATCAATCTGCGGTGGTTGAACGTTGGGCTATAGTCAACTTCTCTGCTCATTATGATATTGATATCCTTGTCAAAGGATTGCAACGAAGTGCAAAATCGAAGGGAATGACCTTGGGTAAGCCAAAAGTGTTTAAAGAGGATAAACAAATGAGCCGTGAGCCGGCCGTCGTCAGGGTTGAACAATTGTATGCAACTGTGATGGATCAGATGGGTTGGCATCCCCAGTTTCTATTGTGCATTCTACCAGAAAAGAATTCGGATATTTATGGTCCTTGGAAAAGAATAAATCTTGCAGATGATGGGAAAGGGGAAGGGGTTGTTACACAGTGTCTTGTCCCAACAAAACTGAAAAATGATCAGTACTTTACTAATCTTCTGTTGAAGATTAATGCCAAGCTTGGTGGGATGAATTCCCTTTTGGCAACAGAGCATTTATGTTCTATACCTATGGTTTCAAAGGTGCCTACCTTAATTCTTGGTATGGACGTCTCACATGGCTCTCCTGGTCGATCATATGTACCATCTATTGCTGCGGTTGTCAGCTCAAGGTGCTGGCCTCAAATTTCACGTTACAGAGCATCAGTTCGTGCTCAGTCACCAAAGGTTGAGATGATTACCGACCTGTTCAAACCTGTTTCTGATTCTAAGGATGATGGTATTATGAGAGAGCTGCTTGATGACTTCATTAATACTTCAGGAAGGCGGCCTGAGCATATTGTCATATTCAGGGATGGGGTCAGTGAATCACAATTCAATCAGGTGCTGAACGTTGAGTTGGACCAAATCATTCAGGCATGCAAGCATTTTCAAGAAACATGGGATCCAAAGTTTACTGTGATTATTGCCCAAAAAAATCATCACACTAGGTTCTTCCAGGCCAATGCTCAAAAAAATGTTCCTCCAGGAACTACCATCGATAATAGAGTCTGTCACCCTAAGAACAACGATTTCTACATGTGTGCTCATGCTGGAATGATTGGAACAACTCGGCCTACGCATTACCACGTACTGCACGACGAGATTGGCTTCTCTGCTGATGATCTGCAAGAACTTGTACATTCTCTTTGTTATGTGTTTCAGAGGAGCACAACAGCTATATCAGAAGTTGCTCCAGTCCGCTATGCTCACTTGGCAGCAGCACAATTGGCACAGTTTATCAAGTTTGATGAAATCCCAGAGTCCTCTTCCTCTTCAAGCCATGGCGGATTCACTTCTGTTGGCACACCTCAAGTCCAAGAGTTGCCTCGTCTTCATGAACGAGTCCGCAACTCCATGTTCTTCTGTTAG 2604 0.4316 MKKTSDRKLLPMARRGLGSKGRKIQLITNHFKVSLAKKDGCFYHYTVAVFYKDGRPVEARGIGRRVIDKVYETYASELPGKDFAYDGEKALFTLGSLPRDKLEYMVLLDQISSNKVGRNGSPDNTDGNQSKTFKVEITYAKKIRMQEIVDALLGQESDHQEAIRVLDIILRQHAAKRGCLLVRQSFFHDKVENYRDIGGGVQGCRGFHSSFRATQGGLSLNVDMSTTLLLKPGPLLEFLRMNENVNRTNLIDWTKAKRMLKNLRIKANNMEYKITGLSDKPCKDQTFSWKRGRDANGEVKSIEITVAAYFERYKGIRLRDSANLPCINVGKPKKPCYFPIELCTLVSLQRYTKALTSSQRASLVRVSRQEPHERKASVSNSLRNCRYNDDHMLRSSGITIGSEFTKVEGRILQAPTLRVGNDKDFTPENGRWNFIDKQLYQSAVVERWAIVNFSAHYDIDILVKGLQRSAKSKGMTLGKPKVFKEDKQMSREPAVVRVEQLYATVMDQMGWHPQFLLCILPEKNSDIYGPWKRINLADDGKGEGVVTQCLVPTKLKNDQYFTNLLLKINAKLGGMNSLLATEHLCSIPMVSKVPTLILGMDVSHGSPGRSYVPSIAAVVSSRCWPQISRYRASVRAQSPKVEMITDLFKPVSDSKDDGIMRELLDDFINTSGRRPEHIVIFRDGVSESQFNQVLNVELDQIIQACKHFQETWDPKFTVIIAQKNHHTRFFQANAQKNVPPGTTIDNRVCHPKNNDFYMCAHAGMIGTTRPTHYHVLHDEIGFSADDLQELVHSLCYVFQRSTTAISEVAPVRYAHLAAAQLAQFIKFDEIPESSSSSSHGGFTSVGTPQVQELPRLHERVRNSMFFC 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3579g00009 867 SMART Piwi_a_2 515 826 IPR003165 GO:0003676
Pral3579g00009 867 SMART DUF1785_2 180 232 IPR014811 -
Pral3579g00009 867 SUPERFAMILY PAZ domain 227 388 IPR036085 GO:0005515
Pral3579g00009 867 CDD PAZ_argonaute_like 232 346 - -
Pral3579g00009 867 ProSiteProfiles Piwi domain profile. 515 826 IPR003165 GO:0003676
Pral3579g00009 867 Gene3D paz domain 226 351 - -
Pral3579g00009 867 Pfam Argonaute linker 2 domain 373 418 IPR032472 -
Pral3579g00009 867 Coils Coil 260 280 - -
Pral3579g00009 867 Pfam PAZ domain 236 363 IPR003100 GO:0005515
Pral3579g00009 867 FunFam Protein argonaute 3 587 867 - -
Pral3579g00009 867 Pfam Piwi domain 516 826 IPR003165 GO:0003676
Pral3579g00009 867 Gene3D - 411 581 - -
Pral3579g00009 867 Gene3D - 586 867 IPR036397 GO:0003676
Pral3579g00009 867 Pfam Argonaute linker 1 domain 182 228 IPR014811 -
Pral3579g00009 867 CDD Piwi_ago-like 397 813 IPR045246 -
Pral3579g00009 867 Pfam N-terminal domain of argonaute 22 170 IPR032474 -
Pral3579g00009 867 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 18 828 - -
Pral3579g00009 867 ProSiteProfiles PAZ domain profile. 272 347 IPR003100 GO:0005515
Pral3579g00009 867 SUPERFAMILY Ribonuclease H-like 509 824 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3579g00009 Pral-Chr3579 87911 94572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3579g00009 14 867 Eukaryotic Initiation Factors Gene Family AT5G43810 35.393 8.84e-169 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3579g00009 K11593 - pvy:116126885 1119.76