Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3579g00001 ATGTATACGAAGGAGCTTGAGGAAATGGAGAAGGTCACAAAAGAAGAGTACTTAGCTTCACTGCGACGGCAAAGCAGTGGATTTTCTAGAGGGGTTTCTAAGTATCGAGGAGTAGCTAGGCATCACCATAATGGTCGATGGGAAGCTCGGATTGGAAGAGTATTAGGCAACAAGTATCTCTACTTGGGTACATACAGTACTCAAGAGGAAGCAGCCACAGCTTACGACTTGGCAGCTATCCAATACAGAGGCGCAAATGCGGTGACCAATTTCGACATTAGCAGATACATTGACAAGATCACCCTCATCAACCAGAACAACAATGGCGAATCCCAGCAAGTTCAAACTGTAATCACAATACCATCACAAGTGGAAGAAGATGAATATGAAGAAGAAGAAGAAGAAGAAGAAGCACCTCCCCATTCATCCTCTTCCCCCTGCTCCTCCTCCGAGTCAGAAAATCTGCAGAATCAGAAGCAACCACCACAACAGCAGCTACAAGACCAAGAAATCGAACCAGAAAATCCTCAAATTCACCCTATTCAGATCTCTCCACCGAACGAAGAATCCGTTCCGATTGCTCCTGTGGAGCCTACTACGACCACCGATGAACAGGAGCTTCCATGGATATTCATGGACGACGACGGATTCTCGCAGTTTAGGGTTCCAGATCTTCCTGACGTCGACCTACTGAGCGCGTTCGGTGATGGTGCACGAAGATTCGACGACGACATTGGATTTCTATTCAGGCCAGATCCCGAGGAGGCCGATTTCAACCTGGACGCGATTTTGAGCAGCCCGAGCTGTGGAGATCTGGCGATGGCGGATTCAAGGAGGATGATGGCGGAGGATTATGATTGTGGGCAAGAGAAGAAGTTGCTATGTTCCGCAAAATCTGCTTCTTGTTCACCAAACTCTTCGATTTCTTGTTCCGATTATACTTCATGA 948 0.4726 MYTKELEEMEKVTKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTYSTQEEAATAYDLAAIQYRGANAVTNFDISRYIDKITLINQNNNGESQQVQTVITIPSQVEEDEYEEEEEEEEAPPHSSSSPCSSSESENLQNQKQPPQQQLQDQEIEPENPQIHPIQISPPNEESVPIAPVEPTTTTDEQELPWIFMDDDGFSQFRVPDLPDVDLLSAFGDGARRFDDDIGFLFRPDPEEADFNLDAILSSPSCGDLAMADSRRMMAEDYDCGQEKKLLCSAKSASCSPNSSISCSDYTS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3579g00001 315 SMART rav1_2 34 98 IPR001471 GO:0003700|GO:0006355
Pral3579g00001 315 MobiDBLite consensus disorder prediction 124 207 - -
Pral3579g00001 315 CDD AP2 33 94 IPR001471 GO:0003700|GO:0006355
Pral3579g00001 315 MobiDBLite consensus disorder prediction 124 138 - -
Pral3579g00001 315 FunFam AP2-like ethylene-responsive transcription factor 33 94 - -
Pral3579g00001 315 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 164 - -
Pral3579g00001 315 PRINTS Ethylene responsive element binding protein signature 74 94 IPR001471 GO:0003700|GO:0006355
Pral3579g00001 315 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Pral3579g00001 315 Pfam AP2 domain 33 84 IPR001471 GO:0003700|GO:0006355
Pral3579g00001 315 Gene3D AP2/ERF domain 33 94 IPR036955 GO:0003700|GO:0006355
Pral3579g00001 315 ProSiteProfiles AP2/ERF domain profile. 34 92 IPR001471 GO:0003700|GO:0006355
Pral3579g00001 315 SUPERFAMILY DNA-binding domain 33 94 IPR016177 GO:0003677
Pral3579g00001 315 MobiDBLite consensus disorder prediction 141 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3579g00001 Pral-Chr3579 27594 35299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3579g00001 2 249 AP2-EREBP Transcription Factor Family AT3G54320 49.621 2.20e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3579g00001 AP2 3.4e-11 CL0081