Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3578g00009 ATGTCAACAGCGAGAGATCCTGCTATAAAGCTTTTCGGTAGAGATATTCCTGTAGATTCAACACGCAACACCGATTCGCCTCAAGTTATGAACAGGTATGATAAATCGACAATTGAAGGCAATGTTCCATTCAGAGCTGGTAAGCAGCATAATTCTATTGAAGAGGCAGATGTAGACGTTTATGGAAGTCCTACTATTGATGTGGAGGCTAAAGTAGATCACAGAACTAAAAACTACAAGGCTGGTAGTAGAGATATGGATCATCAAGAAAAAGTTTTGAAGAAACCAGACAAGGTTCTCCCTTGTCCTCGCTGCAACAGCTTGGAGACTAAGTTTTGCTATTTCAACAATTACAATGTTAATCAACCTAGGCATTTCTGCAAAAATTGCCAAAGATATTGGACAGCTGGGGGGATAATTAGAAATGTTCCTGTGGGTGCTGGAAAGCGCAAAAATAAACATTCGCCATTACCTGTTGGCCCAGATTCAGCATCTGTTGCCCACACGGACTCCAACTCGCCCCCTACAGTTTCAAGACCTACTGGAGGAATGGGAAATAGCCCAGGAATTGGGGAGGATGCTCCTCTTTGTGAATCCTTGGAGGCTGTGTTAAATCTAAAAGGCCAGAAGAAAACTGAAGTTGACTCCTCTATTGGTGATGATGGTGAGGAGGCTTCCAAGGATTTTGAATCTAGGGAAAAGGAATGCTCGGCAAATGAAATTGAGCAGGTAGATTTGCAGCAACAAGTAAATGGTTTTAATCCTCTACATCCACTTCATTACTATCCTGTACCTCCCTGGGCTTACCAATGGAGTCCATGTTGGAATTCAATGGTATTTAGACCTGGTCCTGCTTACATGGGCTCTGCATCCATGATGGCAGTCCCAGGTTTCACTGCACCAACAATGGAATTCTCACCAGGACCTTTCTATTCAAGTCCCCTACCAAGCTGGACTGGCCAGAAGGAAGAGTCTCCATTTGCTGGGTCTACATTTAGTGGCATCCCATCACCTTCCTCTTCCACTAGCAGCAGTGTTTGTTCGGGGACTAAGTCTCCAACCTTAGGAAAACATTCCAGAGATGTAAGTACTCAGACAGGTGATGCAATGAGACGGAATCTTTGGGTACCTAAGACTCTGAGAATTAATGATCCAGAAGAAGCTGCAAGGAGTTCTATATGGTCTGCTTTTGGTACAAAGAGAGAACAGAACAAACCTATTATCAAAGGCAGCGTTTTTAAGTCTTTTGAACCTAAGTCGGAAGGTGCAAGTTCTCATATTTCAAATACTGATCAAATTTTGACCGCAAACCCTGCTGCGTTTTCTCGCTCAGAATCATTTCAGGAAAGAATGTAA 1356 0.4314 MSTARDPAIKLFGRDIPVDSTRNTDSPQVMNRYDKSTIEGNVPFRAGKQHNSIEEADVDVYGSPTIDVEAKVDHRTKNYKAGSRDMDHQEKVLKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGIIRNVPVGAGKRKNKHSPLPVGPDSASVAHTDSNSPPTVSRPTGGMGNSPGIGEDAPLCESLEAVLNLKGQKKTEVDSSIGDDGEEASKDFESREKECSANEIEQVDLQQQVNGFNPLHPLHYYPVPPWAYQWSPCWNSMVFRPGPAYMGSASMMAVPGFTAPTMEFSPGPFYSSPLPSWTGQKEESPFAGSTFSGIPSPSSSTSSSVCSGTKSPTLGKHSRDVSTQTGDAMRRNLWVPKTLRINDPEEAARSSIWSAFGTKREQNKPIIKGSVFKSFEPKSEGASSHISNTDQILTANPAAFSRSESFQERM 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3578g00009 451 MobiDBLite consensus disorder prediction 316 370 - -
Pral3578g00009 451 Pfam Dof domain, zinc finger 97 154 IPR003851 GO:0003677|GO:0006355
Pral3578g00009 451 MobiDBLite consensus disorder prediction 213 230 - -
Pral3578g00009 451 PANTHER CYCLIC DOF FACTOR 2 4 450 IPR045174 GO:0003700|GO:0006355
Pral3578g00009 451 MobiDBLite consensus disorder prediction 165 183 - -
Pral3578g00009 451 ProSiteProfiles Zinc finger Dof-type profile. 100 154 IPR003851 GO:0003677|GO:0006355
Pral3578g00009 451 MobiDBLite consensus disorder prediction 208 230 - -
Pral3578g00009 451 ProSitePatterns Zinc finger Dof-type signature. 102 138 IPR003851 GO:0003677|GO:0006355
Pral3578g00009 451 MobiDBLite consensus disorder prediction 146 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3578g00009 Pral-Chr3578 71502 74123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3578g00009 6 449 C2C2-Dof Transcription Factor Family AT5G39660 33.398 1.96e-68 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral3578g00009 zf-Dof 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3578g00009 - - ccaj:109811729 447.203