Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3577g00060 ATGCTTGTTGAGCAGGCTTCAGAGAAGAAGCTGGCAAACCCTATGAGGGAAATAAAGGTCCAGAAGCTCGTTCTCAATATCTCAGTGGGCGAGAGTGGAGATCGTCTCACCAGAGCGGCTAAGGTGTTGGAGCAGCTTAGTGGTCAGACCCCAGTTTTCTCCAAAGCAAGGTATACTGTTCGTTCCTTTGGTATCAGAAGGAATGAAAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGTCTGAAGGTGAAGGAATATGAACTGCTGAGAAGAAACTTCAGTGATACTGGATGTTTTGGCTTTGGCATTCAGGAGCATATTGATTTGGGGATCAAATACGATCCATCTACTGGTATCTATGGAATGGACTTCTATGTTGTTCTGGAGCGCCCTGGATACCGTGTGGGACGTCGCCGCAGGTGCAAGTCGCGTGTTGGGATCCAGCACCGAGTCACAAAGGAGGATGCAATGAAGTGGTTCCAGGTGAAATACGAAGGAGTGATCCTGAACAAGTCCCAAGCATTTGTTGGTTAG 561 0.4759 MLVEQASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAFVG 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3577g00060 186 ProSitePatterns Ribosomal protein L5 signature. 43 59 IPR020929 GO:0003735|GO:0005840|GO:0006412
Pral3577g00060 186 Pfam Ribosomal protein L5 13 66 IPR031310 -
Pral3577g00060 186 FunFam 60S ribosomal protein L11 6 178 - -
Pral3577g00060 186 SUPERFAMILY RL5-like 13 177 IPR022803 -
Pral3577g00060 186 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 2 176 IPR002132 GO:0003735|GO:0005840|GO:0006412
Pral3577g00060 186 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 6 180 IPR002132 GO:0003735|GO:0005840|GO:0006412
Pral3577g00060 186 Gene3D - 5 181 IPR022803 -
Pral3577g00060 186 Pfam ribosomal L5P family C-terminus 70 168 IPR031309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3577g00060 Pral-Chr3577 893486 895286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3577g00060 6 186 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 94.475 1.46e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3577g00060 K02868 - mnt:21404210 337.421