Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3576g00001 ATGGGTCCATCGGACATTAGGGACCTTTTAACAGCGTTTAGTCCCTCGTTAGACTTGTTTGCTATGAGCGCTGGAGATGGTCGCATAAAGATATGGGATACAGTTAATGGTCAAATCCAGACGGAGTTTGCTGACATCACATCAAGTGATGCAGCAAGTATATATGCAGGATCAGTGAAAGGCCATCTTTCAATAGATTATACATGCATGAAGTGGTTGTCATTAGAAGAAAAGAGAAAAAGGAAGCACACATCCTCATTGTTAGTACTTGGAACAGGTAGTGGTGACGTGTTGGCACTTGATGTGTCTGCTGGTCAATTAAATTGGAGAATTGGTGACTGCCATCCTGGAGGCGTGAAAGCTGTTTCATCTTCTACAAATGGATCATGTGTCTATACTGCAGGTGCAGATGGAATGATTTGCAAGATTGATTGTAAGACAGGAAACCTGTTGGAAAAATTCAAAGCTTCTACAAAGGCAATATCCTGTATGTCTGTTTCTTCAGATGGGAAGACAATAGCTACTGCAGCAGCACAACTAAAAATTTTTAATTGTTCTGATCACAAGAAGATACAGAAGTTCTTCGGCCATCCTGGATCTGTTCGGTGTCTTGCCTTCACTGAAGATGGGCAGTATATTCTATCCTCTGCTGTTGGGGAAAGATATGTTGCTGTCTGGAGGATTGATGGGGCAAAAAAGAAGTCAGTTAGTTGTGTTCTTGCAATGGATCATCCTGCTGTTTTTCTTGATAGCAGGTGCACTCCTAGCAGGGAGCTTGACAATGTTGGAGTATCTGTTTTGGCTATCTCAGAAGTTGGTGATTGTTATGTTTGGTTTGGAAATAATATTGAGGAACTACGCAATGTGAAGCCCATTAAAATATCATTATCTTTGGAAGAGATATCTTCCAGAAATTACATGGGTGCATTGCCAGCAATATATGCTGCAAAGTTAGAAGGCATCCACAATCCTACCTCTGGGCAGATTTTACTTGTTCATGGGTTGCTTGTAAAACCATCGTTTCAAAAAATTTCAGTGCACTCTGGCTCAGACATAAAATTGAATTTCTCTGATGATGGTGTTCTTCTTCGGTTGAACAAGTCCCTCGCAAAGCCTAAGAAGGCAAAAGATGTAAAAAAAGTTACTGCGCTAGACCGTGCTAATGCAGAGGATGCTCTGCTCCCAATTCCTAAGCTTTTTGATTCTCATGTGCAAGAGCAAGAATTTCAAGACTCTTCAGGCAAGGAAGTTATGGATGGTTTGGTTAGAAGTAGTGAATCTGTATCTATGGAGATTGAAGGTACTGCAAAGATCTATCATCTTTATTGTCGAATGAAGTAG 1341 0.4079 MGPSDIRDLLTAFSPSLDLFAMSAGDGRIKIWDTVNGQIQTEFADITSSDAASIYAGSVKGHLSIDYTCMKWLSLEEKRKRKHTSSLLVLGTGSGDVLALDVSAGQLNWRIGDCHPGGVKAVSSSTNGSCVYTAGADGMICKIDCKTGNLLEKFKASTKAISCMSVSSDGKTIATAAAQLKIFNCSDHKKIQKFFGHPGSVRCLAFTEDGQYILSSAVGERYVAVWRIDGAKKKSVSCVLAMDHPAVFLDSRCTPSRELDNVGVSVLAISEVGDCYVWFGNNIEELRNVKPIKISLSLEEISSRNYMGALPAIYAAKLEGIHNPTSGQILLVHGLLVKPSFQKISVHSGSDIKLNFSDDGVLLRLNKSLAKPKKAKDVKKVTALDRANAEDALLPIPKLFDSHVQEQEFQDSSGKEVMDGLVRSSESVSMEIEGTAKIYHLYCRMK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3576g00001 446 Gene3D - 3 141 IPR015943 GO:0005515
Pral3576g00001 446 Gene3D - 142 244 IPR015943 GO:0005515
Pral3576g00001 446 Pfam WD domain, G-beta repeat 6 33 IPR001680 GO:0005515
Pral3576g00001 446 Pfam WD domain, G-beta repeat 191 226 IPR001680 GO:0005515
Pral3576g00001 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Pral3576g00001 446 PANTHER OS03G0300300 PROTEIN 4 426 - -
Pral3576g00001 446 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 237 IPR011047 -
Pral3576g00001 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Pral3576g00001 446 SMART WD40_4 147 184 IPR001680 GO:0005515
Pral3576g00001 446 SMART WD40_4 2 33 IPR001680 GO:0005515
Pral3576g00001 446 SMART WD40_4 104 144 IPR001680 GO:0005515
Pral3576g00001 446 SMART WD40_4 187 227 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3576g00001 Pral-Chr3576 25598 30099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3576g00001 88 250 U-box Gene Family AT2G33340 25.294 1.52e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3576g00001 K14546 - gmx:100784148 622.854