Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3574g00010 ATGTCATTAAGAAATTGTGTCGACGATGAAGAAGAAGAACAAGGACGATGGGGAAATCTACCGCCAGAATTGCTTTGGTACATGATAAAGAGAGTGGAAGAGACTGAAGCATCTTGGCCTGCTCGTTTTATTCTGTCTTGTGCTTCAGTTTGTAAGTCATGGAGAGCAATCACAAAGGACATTGTTAAGACTCCTGAGCTCTCTGGACACCTCACTTTTCCCATCTCATTGAAACAACTAGGGCATCGGGATTCCCCAATCCAATGCTATATCAAAAGGAACAGAGAAACTTCTATTTGTTCGTTGTACTTGGGTCCAGAGCCATCAGACAATAGGAATGATATGTTTTTGTTGGCTGCCAAAAGAGAAAAAGGGTTCACACATATTAGTTACTTTATATCTTTAGTTTCTAATGACTTTCGTCCAACCAGCGACACATATGTTGGCGAACTAAGGTCTAATTTGTTCGAGGACAAGTTCACTATATATGACAGTCAACCTCCAGAACAATGTGAACCTGTTGAAGTAGTTAAACCCATAAACAATCAATTTATTCAGAGATTATTTTACCCTAATAAGGTACCTGAATACAATGTTGAACAAGAGAAAGAGAAAGTAATCTTGGAATTTGCTAAGATTGGAGAAGACGTGTTTGTTATGGATTACTGTTATCCACTCTCAGCATTTCAAGCCTTTGCCATCTGCCTCAGCAGCTTTGATGCTGATGTCCCCACCTGCAGCTGTGATTGTGGCTCCTAA 759 0.4005 MSLRNCVDDEEEEQGRWGNLPPELLWYMIKRVEETEASWPARFILSCASVCKSWRAITKDIVKTPELSGHLTFPISLKQLGHRDSPIQCYIKRNRETSICSLYLGPEPSDNRNDMFLLAAKREKGFTHISYFISLVSNDFRPTSDTYVGELRSNLFEDKFTIYDSQPPEQCEPVEVVKPINNQFIQRLFYPNKVPEYNVEQEKEKVILEFAKIGEDVFVMDYCYPLSAFQAFAICLSSFDADVPTCSCDCGS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3574g00010 252 SUPERFAMILY Tubby C-terminal domain-like 65 241 IPR025659 -
Pral3574g00010 252 Gene3D - 9 67 - -
Pral3574g00010 252 PANTHER TUBBY-RELATED 201 241 - -
Pral3574g00010 252 SUPERFAMILY F-box domain 13 60 IPR036047 GO:0005515
Pral3574g00010 252 PRINTS Tubby superfamily signature 131 147 IPR000007 -
Pral3574g00010 252 PRINTS Tubby superfamily signature 147 171 IPR000007 -
Pral3574g00010 252 Pfam Tub family 197 240 IPR000007 -
Pral3574g00010 252 Pfam Tub family 77 172 IPR000007 -
Pral3574g00010 252 Gene3D Tubby Protein; Chain A 75 198 IPR025659 -
Pral3574g00010 252 Pfam F-box domain 17 63 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3574g00010 Pral-Chr3574 78196 84570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3574g00010 201 246 TUB Transcription Factor Family AT2G18280 69.565 6.88e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral3574g00010 Tub 1.4e-22 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3574g00010 K19600 - csin:114257613 205.682