Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3574g00009 ATGTCATTATTGAGAAATGGTGTGCTTGATGATGACGAAGAACAAAGTGGAAGATGGGAAAATCTGCCTCCAGAATTGCTTTGGGACATAATAAGGAGATTGGAAGAGACTGAGACATGTTGGCCTGAACGTGTTATTCTCTCTTGTGCTTCCGTTTGCAAGTCATGGAGAGCAATCACAAAGGACATTGTTAAGACTCCTGAGCTATCTGGACGACTCATATTTCCCACCTCATTGAAGCAACCAGGGCCACGAGATTCTCCAATACAATGCTATATCAAAAGGAAGAGAGAAACTTCTATTTATTTGCTGTACTTGGGTTCACAGCCATCAGAGAATAAGGATGACAAGTTGTTGCTGGCTGCCAAAAGAAAACAAAGGATAAGAAATACAAAATATGTCATATCATTAGTTGCTGATGACTTTCGTCGGACCAGCAAGACATATGTTGGCAAACTTAGGTCTAATTTCTTGGATTACAAGTTCACTATATATGACACTCAACCTCCACATTCCAACAAAAACAGTCAATTGAATCATAAATTGTCTCGATGTAAGTACTACAACGTTGGCAGTATTACATACAAGATCAACATGATTCACAAATGCAGAGTTCACAGAATCAAAGGTCCAAGAAAAATGAGCTGTAGCATCATGATGATGATGAAGAACTCTATGACGATGGAACTTAAAAGCAAGGATCCCATATGGGATGAACAATGCCAGCATTGGCACCTCAACTTCAGACATCATGATACCTTGGCATCTGATAATTTCCAGCTCGTTTATGCTGCTGATGATGAAGAACACGAACATGAACAAGAACAAGAAGAAAAGGTAATCTTGGAATTTGCTAAGATTGGAGAAGACGTGTTTGTTATGGATTACTGTTATCCACTCTCAGCATTTCAAGCTTTTGCCATCTGCCTCAGCAACTTCGATGCTAAACCAACCAGTGATTGA 963 0.3956 MSLLRNGVLDDDEEQSGRWENLPPELLWDIIRRLEETETCWPERVILSCASVCKSWRAITKDIVKTPELSGRLIFPTSLKQPGPRDSPIQCYIKRKRETSIYLLYLGSQPSENKDDKLLLAAKRKQRIRNTKYVISLVADDFRRTSKTYVGKLRSNFLDYKFTIYDTQPPHSNKNSQLNHKLSRCKYYNVGSITYKINMIHKCRVHRIKGPRKMSCSIMMMMKNSMTMELKSKDPIWDEQCQHWHLNFRHHDTLASDNFQLVYAADDEEHEHEQEQEEKVILEFAKIGEDVFVMDYCYPLSAFQAFAICLSNFDAKPTSD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3574g00009 320 PANTHER TUBBY-RELATED 13 317 - -
Pral3574g00009 320 Gene3D - 12 69 - -
Pral3574g00009 320 SUPERFAMILY Tubby C-terminal domain-like 67 317 IPR025659 -
Pral3574g00009 320 SUPERFAMILY F-box domain 13 62 IPR036047 GO:0005515
Pral3574g00009 320 Pfam Tub family 225 314 IPR000007 -
Pral3574g00009 320 Pfam Tub family 79 224 IPR000007 -
Pral3574g00009 320 Pfam F-box domain 19 65 IPR001810 GO:0005515
Pral3574g00009 320 PRINTS Tubby superfamily signature 298 320 IPR000007 -
Pral3574g00009 320 PRINTS Tubby superfamily signature 277 296 IPR000007 -
Pral3574g00009 320 PRINTS Tubby superfamily signature 230 247 IPR000007 -
Pral3574g00009 320 PRINTS Tubby superfamily signature 149 173 IPR000007 -
Pral3574g00009 320 PRINTS Tubby superfamily signature 133 149 IPR000007 -
Pral3574g00009 320 Gene3D Tubby Protein; Chain A 75 320 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3574g00009 Pral-Chr3574 62256 64701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3574g00009 19 318 TUB Transcription Factor Family AT2G18280 48.148 1.99e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral3574g00009 Tub 1.3e-35 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3574g00009 K19600 - gmx:100778290 306.99