Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3572g00012 ATGAATTACCTTAGCCTACCAAGCAGCTCGTCTTCTCGGAGGACCTGGAAATACGAAGTGTTTCTGAGTTTCAGAGGTGAGGATACTCGCAACAGTTTCACCGATCATCTTCATGCTGCTCTTCAACGAAAAGGTATATACACTTTCAAGGATGATAAAAGGCTGCAGAGAGGAGAAAGTATTCGGCCAGAGCTACTGAAAGCGATTGAACAATCCCGGATTTCACTCGTCGTCTTATCCAAAAGTTTCGCAGATTCCACATGGTGCTTGGACGAACTGGCCAAGATTTGCGAGGCAATTGGTCAACCGGGATACACTGTGCTACCAATTTTCTACCATGTTGATCCATCTGACGTACGAAAGCAGAGGGGCGATTTCAAACAAGCGTTTGATAAACATGAGCGAGGCTCAAGTGATAAGGTCCCAGGATGGAAGTCAGCTTTGGAACAAGTAGGCCAGCTCGCCGGTTATGATGTAAGGAATAAATCAGAGTCGGGTATTATTGATGAAATCGTTATGGATGTGATCCATAAACTGAAGCATAAATTCTCAAGTCTGGCTGATGATCTAGTGGGGATGCAATCTCGTGCAGAAGCTTTTGAAAAGCTTCTAAATCTAGATTCATCCGATGATATTCTATTTGTGGGGATTTGGGGAATGCCCGGAGCAGGGAAGACCACTCTTGCTGCAGTTGTATATGATAGAATCTCCCACAACTTCGATGCTTCCTGTCTTCTTCTTGATGTCAGTAAAGATCGCAAGCGTTCTGGTCTTGTCCGCTTACAACAACAACTTCTTTGTGAAACAGTGGGGAAAGATCAAGAGGTTTGGGAGGAACACACAGGAACCAATTTAATAAGCACTAGGCTTCGCGAAACTAAAACTCTTATTGTTGTTGATGGTGTTGACCATTTCGATCAGTTGAAGAAATTGGTTGGGAAGCACGAGTGGTTTGGTCCTGGGAGTAGAATCATCATAACAACTAGAGATGATAAAATCCTTGAGAGGCGTGGAGTGGGTAAAGATAAAGTTTACAAGGTTGAACTTCTGAATGATGAAGAAGCTCTTCAACTTTTTTGTGTTAGAGCCTTCAAAAGTGATGTTCCTGATGATGGATTTGAAGAGTTGACCCATAGTTTTCTACAATATGCTAAAGCCCTTCCACTGGCAATCCAAGTGTTAGGTTCCTCTTTGCGTACCCGGAAACAATCAGAGTGGAAAGCACTATTAGATAGATTGAAAGAAATTCCCGACAGAGAGATTATGAAAGTGCTGGAAACGAGTGTACATTCACTAGACCAAAGGGACGAGGATATATTTGTAGATGTTGCTTGTTTCTTCAAGGGTGAAGATGAGAAATATGCCAAAAAAATTCTAGATCATTGTGGATTTAATCCCGAGCTTGGAATCAACATTCTGTGTGAAAGATCACTCTTAGTCATCGTCAATGGAACACTCCGGATGCATGATTTGCTGCAAGAAGTGGGCTGGAAAATTGCGAAAGGAGATTTCCCTCAAGAGCCAGCAAAGTGGAGCAGACTCTGGTTGTACAGAGATCTTCAAGCTGTTAGGACAGTGAGTAATGTTTTGATCATTCATCGAGAAGATGTAGATGTGAATGAGATGCTGCCATTGAGGGCTGAAGTTTTATCCCAAATGAATTGCCTAAGGCTAATCATATTCCCTTCTATGAAATTTTCAGGAAAGCTGAATAATCTTTCCAATGACTTGAGGTTTCTTTCCTGGCAGAAATTTCCTTTCAGTACTTTACCACCAAGTTTTGAACCAGCTAAACTTGTTGAATTGGTCCTGATTGATAGCAATATAAGACTTCTATGGGAAGGTGTAAAGGCTTTGCCAGAGTTGAAGACCGTTGACCTGCGCGGCTCTAAAAATCTAATAAAGACGCCAAACCTTAAAGGAGTGAAAAATCTTGAGAAGCTAAATCTTGAAGGATGTAGTGGATTATTGGAGGTTGATGCATCTATTGGAGATCTCACAAAGCTAACATTCCTGAATTTGAAAAGCTGTGATCGTCTAATCAGTATCCCAAACACCATATTTCTTTCAACTTCTCTGGAAACTCTGAACCTTCCTGGTTGTTTAAAACTCGCACAACGTTTGAACTTCCAAGGGCCTCGAGGACCCAATGAGCAATCTTAG 2163 0.4184 MNYLSLPSSSSSRRTWKYEVFLSFRGEDTRNSFTDHLHAALQRKGIYTFKDDKRLQRGESIRPELLKAIEQSRISLVVLSKSFADSTWCLDELAKICEAIGQPGYTVLPIFYHVDPSDVRKQRGDFKQAFDKHERGSSDKVPGWKSALEQVGQLAGYDVRNKSESGIIDEIVMDVIHKLKHKFSSLADDLVGMQSRAEAFEKLLNLDSSDDILFVGIWGMPGAGKTTLAAVVYDRISHNFDASCLLLDVSKDRKRSGLVRLQQQLLCETVGKDQEVWEEHTGTNLISTRLRETKTLIVVDGVDHFDQLKKLVGKHEWFGPGSRIIITTRDDKILERRGVGKDKVYKVELLNDEEALQLFCVRAFKSDVPDDGFEELTHSFLQYAKALPLAIQVLGSSLRTRKQSEWKALLDRLKEIPDREIMKVLETSVHSLDQRDEDIFVDVACFFKGEDEKYAKKILDHCGFNPELGINILCERSLLVIVNGTLRMHDLLQEVGWKIAKGDFPQEPAKWSRLWLYRDLQAVRTVSNVLIIHREDVDVNEMLPLRAEVLSQMNCLRLIIFPSMKFSGKLNNLSNDLRFLSWQKFPFSTLPPSFEPAKLVELVLIDSNIRLLWEGVKALPELKTVDLRGSKNLIKTPNLKGVKNLEKLNLEGCSGLLEVDASIGDLTKLTFLNLKSCDRLISIPNTIFLSTSLETLNLPGCLKLAQRLNFQGPRGPNEQS 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3572g00012 720 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 157 IPR035897 -
Pral3572g00012 720 Pfam TIR domain 17 191 IPR000157 GO:0007165
Pral3572g00012 720 SUPERFAMILY "Winged helix" DNA-binding domain 420 520 IPR036390 -
Pral3572g00012 720 Gene3D - 349 433 IPR042197 -
Pral3572g00012 720 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 181 - -
Pral3572g00012 720 ProSiteProfiles TIR domain profile. 16 179 IPR000157 GO:0007165
Pral3572g00012 720 Gene3D Ribonuclease Inhibitor 539 711 IPR032675 -
Pral3572g00012 720 PRINTS Disease resistance protein signature 289 303 - -
Pral3572g00012 720 PRINTS Disease resistance protein signature 214 229 - -
Pral3572g00012 720 PRINTS Disease resistance protein signature 384 398 - -
Pral3572g00012 720 PRINTS Disease resistance protein signature 617 633 - -
Pral3572g00012 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 442 IPR027417 -
Pral3572g00012 720 Pfam NB-ARC domain 201 418 IPR002182 GO:0043531
Pral3572g00012 720 SUPERFAMILY L domain-like 533 703 - -
Pral3572g00012 720 SMART till_3 17 154 IPR000157 GO:0007165
Pral3572g00012 720 Gene3D - 11 180 IPR035897 -
Pral3572g00012 720 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 706 IPR044974 GO:0006952
Pral3572g00012 720 Gene3D - 181 339 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3572g00012 Pral-Chr3572 163365 166066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3572g00012 7 706 WRKY Transcription Factor Family AT4G12020 30.939 1.92e-81 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3572g00012 - - pcin:129315185 1121.3