Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3572g00009 ATGGACGACGGGAGGCCGACCAATATTTATCTAAGTCACAGAGGCGATGATTACAACGTTTATGAATTCACTGATAAGCTTTGTGCTGCTTTTGAAGCTGAAGGTTTAACAACCTTTGAGCAATACCAGGATCTTGAAACAGACGACTCACTTCTAGATTATCTACTGAAACCAATTCATGAATCATGGGTCTATATATTTATCTTCTCCAAAAACGATGCTACACCAAAAGGTCACTTAGTGGAACTCCAAGAAATTACTTGGCACATTCATAGGCCACGCGGTGTTATATTCATCTTCTACGATCTTGATCTAATCCAGGAAAGGCAGGTTCTGGATGAATTCTATGACAAGGTTGCTAGTCAGTTCAGCAAATTCACAAGTGGGACGCCAGATGATCTTCTTGAGATGTACAGTATCATGATCCGGCCACGCCGAATTTCAAAAGCCATCAGTGAGATCGTTAGCAAGGTCATGATAGCTCTGCGTCAACTAGAGTATGTTGTTGAGCTAGTTGGGATGCAATCTCGTGTGGCTGAAGTTGAAAAGCTTTTGAATCTAAGTTCAGATGATGAACAAGCTCGAGTAGTAGGCATTTGCGGTATGGGTGGAATAGGCAAATCAACTCTTGCTCAAGTTTTGTGCAGATCAATCTCTCGCCATTTTGATGCTTATTGTTTCATAGAGAATATAAGTCAACTTTTGCATGATGATCTTCCTCTAATGGAAATTCTTTATCAAAACCTTGAGATCAAAGATCCAGAAACTTGGACTCCAAACCAACGCAAATTTCTTATTGTACTTGATGGTGTTGATCACGAACAAAATCTTGGTGCACTGAATCTGCTTCTGAAATCTGAATGCTTTGAAAAAGGAAGTAGAATCATCATTACAACTAGAAATGAACGAGTCCTTGAGAAGTGTGAAGTGGAACATGTTTATAGACCTAAAATACTGAGTGAGGATGAAGCTCTGAAACTCTTCTATATAAAAGCCTTTGGACGTTATTCTGCAGAGAGTGGATATGAAGAGATGACAAAGAGTGTGCTGGAATATGCAAATGGACTTCCATTGGCAATTATAAAACTGGGCACATTCTTATGCCAGAAAAGTGTTGGAGAATGGAGAAGTGCCTTGGCTCAACTAAAAAGGATTCCTGATCGTCACATAGTGGAGGTGCTCAAAAAAAGTTTTGATGAACTTGATGATAAGAGCAAGGAAATGTTTTTGGACATCTCATGTTTTTTCATTGGGAAAAAGATGGATCGTGTGAAGGAAATTTTAGATACTTGTGGCTTTCCTGCGGAGAATGGAATGAAAATTTTGATTGAGAAATCACTCATGAACATTTTAGATCACAAAATAGAGATGCATAATATGTTGCAAGAAATGGGACAACATATTGTTCGGAGAGGATTCCCTTACGAGCCCAAAAAATGGAATAGGTTGTGGCATATAGATGATATTGATTACGTCATGCAACAAAATGAAGGCACAGCTATGAAAAGATTTGAAGCTATATCCCTGGATTTGGAAGACACCAGAAGAGTTACATTAAGAGTTGAAGCTTTATCACAAATGAGCAATCTTAGATTACTCATATTCCGTAATGTCAACTTTTATGGAACTCTCAATTCTCTTTCTAATGAACTACGATATGTTTCGTGGCATCAATATCCTTTCACTAGTTTGCCATCGACTTTCGAGCCTTATGCACTAGTGGAATTGATCATGACTGATAGCAACATCAAAGAATTATGGCAAGGCCAAAAGGTGCTTCCTAAGTTGAAAACTATGATTCTTAGTGGCTCCAAAAATTTGATGAAGATGCCAGATTTTGGAGGGGCTCCAAATCTTGAAAGATTAGAGCTGGAAGGATGTACTGGATTGTTGCAATTACATGCATCTATTGCTAGAATTCCAAAGCTCAAATTCTTAAATCTGAGAAACTGCATTAATTTGGTTAGTATTCCGAATGTGTTATTTGGTCAAGGTTGTTTGGAAATTCTGAATCTTGCTGGCTGTTCAAAGTTTGCTTCTTGTTTGAGATTTTGCCCTTTGAAGAGCTCCATAGAAGTGAGACTACTCAGCATTTGGTACCATCAATTCTTAGAAAGAATGTTGTACTTTTTTCTTTTTGTTTTGCCCCAACATAAAAATTATCATCTGCTTGTTTTTTGCTGTCTTTTTTACTTGTTCTGTAGGGTAAAAATAAAAGGTGTGTCCTGA 2229 0.3791 MDDGRPTNIYLSHRGDDYNVYEFTDKLCAAFEAEGLTTFEQYQDLETDDSLLDYLLKPIHESWVYIFIFSKNDATPKGHLVELQEITWHIHRPRGVIFIFYDLDLIQERQVLDEFYDKVASQFSKFTSGTPDDLLEMYSIMIRPRRISKAISEIVSKVMIALRQLEYVVELVGMQSRVAEVEKLLNLSSDDEQARVVGICGMGGIGKSTLAQVLCRSISRHFDAYCFIENISQLLHDDLPLMEILYQNLEIKDPETWTPNQRKFLIVLDGVDHEQNLGALNLLLKSECFEKGSRIIITTRNERVLEKCEVEHVYRPKILSEDEALKLFYIKAFGRYSAESGYEEMTKSVLEYANGLPLAIIKLGTFLCQKSVGEWRSALAQLKRIPDRHIVEVLKKSFDELDDKSKEMFLDISCFFIGKKMDRVKEILDTCGFPAENGMKILIEKSLMNILDHKIEMHNMLQEMGQHIVRRGFPYEPKKWNRLWHIDDIDYVMQQNEGTAMKRFEAISLDLEDTRRVTLRVEALSQMSNLRLLIFRNVNFYGTLNSLSNELRYVSWHQYPFTSLPSTFEPYALVELIMTDSNIKELWQGQKVLPKLKTMILSGSKNLMKMPDFGGAPNLERLELEGCTGLLQLHASIARIPKLKFLNLRNCINLVSIPNVLFGQGCLEILNLAGCSKFASCLRFCPLKSSIEVRLLSIWYHQFLERMLYFFLFVLPQHKNYHLLVFCCLFYLFCRVKIKGVS 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3572g00009 742 Pfam NB-ARC domain 182 386 IPR002182 GO:0043531
Pral3572g00009 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 412 IPR027417 -
Pral3572g00009 742 PRINTS Disease resistance protein signature 258 272 - -
Pral3572g00009 742 PRINTS Disease resistance protein signature 353 367 - -
Pral3572g00009 742 PRINTS Disease resistance protein signature 591 607 - -
Pral3572g00009 742 PRINTS Disease resistance protein signature 196 211 - -
Pral3572g00009 742 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 111 IPR035897 -
Pral3572g00009 742 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 680 IPR044974 GO:0006952
Pral3572g00009 742 Gene3D Ribonuclease Inhibitor 499 693 IPR032675 -
Pral3572g00009 742 ProSiteProfiles TIR domain profile. 5 134 IPR000157 GO:0007165
Pral3572g00009 742 SUPERFAMILY L domain-like 507 705 - -
Pral3572g00009 742 Gene3D - 318 402 IPR042197 -
Pral3572g00009 742 SUPERFAMILY "Winged helix" DNA-binding domain 389 491 IPR036390 -
Pral3572g00009 742 Gene3D - 152 313 IPR027417 -
Pral3572g00009 742 Pfam TIR domain 9 119 IPR000157 GO:0007165
Pral3572g00009 742 Gene3D - 1 131 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3572g00009 Pral-Chr3572 137281 140817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3572g00009 169 674 WRKY Transcription Factor Family AT5G45050 34.758 6.11e-77 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3572g00009 - - pcin:129300842 634.024