Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3572g00006 ATGAAAGTGATAGAGGAGAGTTTCGTTATTGGACCATCGTCATCATCATCAAGACCGATTCATGTTTATCTAAGTTTCAAAGGAGATGACGAAACTTGTAGATTTACAGATATGCTGTGGGCTGCTCTTGAGACTGATGATTTGAATACCTTTTGGGATGATAAGAAGCTTGAACCAGGTGATTCCATCTGTCTTCCTCGTCATTTTCTTAAACCAATTCGACAATCCAATATTTCCATCGTTGTCTTCTCCAAAAACTATGCTTCTTCTGTATGGTGCCTTGAGGAGCTCTCAGAGATCGCTGCACGCATTCATGAACCGCGATATACTGTTTTTCCAATTTTCTGTGATGTCGACCCATCTGAGATTCAAAACCAAAGTAACTCTTTTGAAAAAGCTTTTGCTCAACATGAACAAAGGTTCCCAACAAATTTACGCAAGGCACACATTTGGAGATCAGCAATAAATCAAGTGGCCAATCTCTCTGCGGGTTGGGATGTACCATATGAGCCAGAGCCACAAGTTGTTGATGACATCATTAGGGAGGTCAAGAAAAAAATGCGTGAATTAGTCTATGCTGATGTTGATCTGGTAGGGATGCGATCTCGAGTGAGAGAAGTAGAAGAGCTTCTTGATTTGGGTTCAAAAGATGACATTCGGGTTGTGGGCATTTGTGGTATGGGTGGAGCAGGGAAGACAACTCTTACGAAAGTTCTCCATGATAGGATCTCTCACCATTTTGATGCTTCTTATTTGGTACTCAACGCAATTGAATTTAATCAGAACACAATGCTAGGAAATTACAAGAGAACTCTCTTAGTTCTCGATGTTGTTGGTATTGGTGATATTCTACGATCACTGATCATTGCCGTAAGAGAAAACCTATTAGGAGGAGGGAGTAGAATCATCATAACAACTAGAGATGAAGGAGTGCTTAAGATGTTTGAAAAGCATGATATTTATAGGGTTAACTTATTGACCAAGAACGAAGCTCTTCAGTTAGTTTGTAGGAAAGCTTTCAAATGTGGTTTCCCAGCAAGAGTTTATGAGGAGCAAGTAGATAGTGTACTCCAATATACTAATGGCCATCCATTGGCAATTGTTATGCTGGGCTCATTCTTGTTTAACATAAAACCCTCAGATTGGAGTAATGCCTTGGTTCAATTCAAAATATTGGCTAAGCCGTCGTTAACTAAAGTACTCAAACAAAGTTTTGATGATTTGGATAATAAGCACGCAGAAGCCTTTCTAGACATTGCATGTTTTTTCATAGGGAAGGAGATCAAATTTGTAAAAGGAGTCTTACGGTCTTGCGATTTGGTTAAGGACAATGGAATTCAACTTTTGGATGAAAAGTCACTCATCACCATTATAGATCAAAAAATACAAATGCATGGTTTACTGCAAATGGGAAGAGAAATTGTTCAGAATCAATTCCCTTCCAAGCCAGAAGAATGGAGTAGATTATGGGATTTTGCTGATGTTTATAGTGTTGTGCAACGTGACACAGCGGCTCTAAAGGTTAAAGCAATAGTTCTCGAGCTATAA 1548 0.3908 MKVIEESFVIGPSSSSSRPIHVYLSFKGDDETCRFTDMLWAALETDDLNTFWDDKKLEPGDSICLPRHFLKPIRQSNISIVVFSKNYASSVWCLEELSEIAARIHEPRYTVFPIFCDVDPSEIQNQSNSFEKAFAQHEQRFPTNLRKAHIWRSAINQVANLSAGWDVPYEPEPQVVDDIIREVKKKMRELVYADVDLVGMRSRVREVEELLDLGSKDDIRVVGICGMGGAGKTTLTKVLHDRISHHFDASYLVLNAIEFNQNTMLGNYKRTLLVLDVVGIGDILRSLIIAVRENLLGGGSRIIITTRDEGVLKMFEKHDIYRVNLLTKNEALQLVCRKAFKCGFPARVYEEQVDSVLQYTNGHPLAIVMLGSFLFNIKPSDWSNALVQFKILAKPSLTKVLKQSFDDLDNKHAEAFLDIACFFIGKEIKFVKGVLRSCDLVKDNGIQLLDEKSLITIIDQKIQMHGLLQMGREIVQNQFPSKPEEWSRLWDFADVYSVVQRDTAALKVKAIVLEL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3572g00006 515 Gene3D - 13 187 IPR035897 -
Pral3572g00006 515 SMART till_3 19 161 IPR000157 GO:0007165
Pral3572g00006 515 PRINTS Disease resistance protein signature 360 374 - -
Pral3572g00006 515 PRINTS Disease resistance protein signature 221 236 - -
Pral3572g00006 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 419 IPR027417 -
Pral3572g00006 515 Pfam NB-ARC domain 205 253 IPR002182 GO:0043531
Pral3572g00006 515 Pfam NB-ARC domain 268 387 IPR002182 GO:0043531
Pral3572g00006 515 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 162 IPR035897 -
Pral3572g00006 515 Gene3D - 261 323 IPR027417 -
Pral3572g00006 515 Gene3D - 188 260 IPR027417 -
Pral3572g00006 515 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Pral3572g00006 515 SUPERFAMILY "Winged helix" DNA-binding domain 397 499 IPR036390 -
Pral3572g00006 515 Gene3D - 325 409 IPR042197 -
Pral3572g00006 515 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 499 IPR044974 GO:0006952
Pral3572g00006 515 Pfam TIR domain 21 186 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3572g00006 Pral-Chr3572 72992 100440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3572g00006 195 491 WRKY Transcription Factor Family AT5G45050 33.333 4.53e-39 150