Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3571g00024 ATGGTATCATCGTCAGCTGGATTCTGCTACTCCGAGGTATCAACGGGCAACCCAGGGATCCAAAGCCATATGGGGAATCATCAGATCCAAGGGTTTGAATCCGACCCGGACATGTTCAGCCTGACGGCGAGCATGGACATGATTGGCTTCCCCAAGAATCTTCAGCAGCAAAGTGAAAGTAACAGCCTCGTTTGGAAAAGCTTTCTGGGTAATAAACCCACCCACCACAATCCGGGTCCTTCTTCTTCCAAGACGACCATGAATAATGAGTCTGGTTCCACCAATTTCTATCAGTACACCAAACCAGATTTCACATCCAACGATAATGATCTGATTGTAGGAGGAGCTCCAAATCATCATGATTCTTCGTCTACCGCTTGGCCAGATAACAGGTTACTTGTGGATGATTCTTCTTTAAGGTGTGTGTTCCCTTGCGAAGGAAACGAAAGGCCCAGTCAGGGCCTTTCGCTCTCTTTGAGCTCCAATAATCCCTTAAGCATTGGGTTACAATCTTTTGAACTAAGACAGACCAACAACCACCACCATCATCAGAACCAACCGGACTTTGTTTCTTCAACTAGTGGAGACAAGTTATTGTTGGGAAAATCAGTGAATCATCCTCATCATCATCAACAACAACAAGAAGCTGGTAATCTGTATCAAGGCCATTTTCTGCTTAAGAACTCCAAATATTTGGTTGCTGCACAGGAACTTCTCAACGAGTTTTGCAGTCTGGGAACGAAGCAAAGTGACATAGTGAAGCAAAAGTCGTCATCAAGTCAGAAAAACCAACAGTGGGAAGATGATAACGGAATCGGTCCCTCCAAGAAGCATCCCGTTGGCTCTCTAGAATTTATCGAATTACAGAAAAGAAAGACCAGACTACTCTCCATGCTTGAAGAGGTTGAGAGGAGATACAGGCACTACTGCAACCAAATGAAGGCGGTGGTGTCGTCGTTTGAGGCGGTGGCCGGGACCGGAGCTGCGAGGGTTTACTCGGCGTTGGCATTGAAGGCGATGTCGAGGCATTTCAGGTGTCTGAAAGATGGGATATTGAGTCAGATAGAAGTGGCAAGAAGAGGCATGGGAGAGAAAGATCCAGTTGCACCAGGAACAACAAGAGGTGAAACGCCAAGACTCAGAATCATAGACCAAGCTCTCAGACAACAGAGAGCTTTCCAACAAATGAGCATGATGGAGAGTCATCCATGGCGACCCCAAAGAGGCCTTCCCGAAAGATCCGTTTCAGTTCTTCGAGCTTGGCTTTTCGAGCATTTTCTTCATCCGTACCCAAGTGATATGGATAAACATATCTTAGCTCGCCAAACTGGTCTCTCAAGAAGCCAGGTGTCAAACTGGTTTATTAATGCAAGAGTGAGGCTGTGGAAGCCAATGGTGGAAGAGATGTACTTGGAGGAAACAAAAGAGCCTGAAAACAACATGGCCTCTTCTGAGGGGGTCACTGATCCCGCCGTGGACGACAACATCTTGACCTGCAGCCGGAACCTCGATAACCCACCTCCGACAACGCGTCTGGTAGATCAAAAGCCGCTCCAGAACCACCGGTTGCTTCGAATAGACTCCGAGTGTGTGTCTTCTATCATAAACAACAACCCAGATCACAAAAACGAATCCACCAAGAACAATAATCCGCAAGATCACCAGTGTGGTACATTTGGAGCTGGAGAGCTTGACTTTTCATCATACAACACTCACAACTCTGCAGCTCGCATGGTTTCTTACAGTAGTGAGAATGGGAATAATAGTAATCAGAACTATAACAGTGGAGGTGTTTCATTGACGCTAGGGTTACAGCAGCACGGAGGAAGTGGGGTGAGTCTGGCGTTTCCTCCGCCGTCTCAGGCGTCACTGTTCTATCCAAGAGATCAAATGGAAGATTGTCAACCTGTTCAGTACTCGCTTTTGGACGGTGAAGCTCAAAATCTTCCTTACAGAAATTTAATGGGTGCACAGTTGCTCCATGACTTGGCGGGATAG 1998 0.4685 MVSSSAGFCYSEVSTGNPGIQSHMGNHQIQGFESDPDMFSLTASMDMIGFPKNLQQQSESNSLVWKSFLGNKPTHHNPGPSSSKTTMNNESGSTNFYQYTKPDFTSNDNDLIVGGAPNHHDSSSTAWPDNRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSNNPLSIGLQSFELRQTNNHHHHQNQPDFVSSTSGDKLLLGKSVNHPHHHQQQQEAGNLYQGHFLLKNSKYLVAAQELLNEFCSLGTKQSDIVKQKSSSSQKNQQWEDDNGIGPSKKHPVGSLEFIELQKRKTRLLSMLEEVERRYRHYCNQMKAVVSSFEAVAGTGAARVYSALALKAMSRHFRCLKDGILSQIEVARRGMGEKDPVAPGTTRGETPRLRIIDQALRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDMDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEPENNMASSEGVTDPAVDDNILTCSRNLDNPPPTTRLVDQKPLQNHRLLRIDSECVSSIINNNPDHKNESTKNNNPQDHQCGTFGAGELDFSSYNTHNSAARMVSYSSENGNNSNQNYNSGGVSLTLGLQQHGGSGVSLAFPPPSQASLFYPRDQMEDCQPVQYSLLDGEAQNLPYRNLMGAQLLHDLAG 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3571g00024 665 FunFam BEL1-like homeodomain protein 4 407 469 - -
Pral3571g00024 665 Pfam Associated with HOX 226 351 IPR006563 -
Pral3571g00024 665 SMART prehox3 220 353 IPR006563 -
Pral3571g00024 665 Gene3D - 407 469 - -
Pral3571g00024 665 MobiDBLite consensus disorder prediction 535 556 - -
Pral3571g00024 665 MobiDBLite consensus disorder prediction 68 93 - -
Pral3571g00024 665 MobiDBLite consensus disorder prediction 535 561 - -
Pral3571g00024 665 Pfam Homeobox KN domain 421 460 IPR008422 GO:0003677|GO:0006355
Pral3571g00024 665 MobiDBLite consensus disorder prediction 253 270 - -
Pral3571g00024 665 SMART HOX_1 404 468 IPR001356 GO:0003677
Pral3571g00024 665 Coils Coil 285 305 - -
Pral3571g00024 665 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 170 486 - -
Pral3571g00024 665 MobiDBLite consensus disorder prediction 179 215 - -
Pral3571g00024 665 SUPERFAMILY Homeodomain-like 405 471 IPR009057 -
Pral3571g00024 665 MobiDBLite consensus disorder prediction 183 199 - -
Pral3571g00024 665 MobiDBLite consensus disorder prediction 253 278 - -
Pral3571g00024 665 ProSiteProfiles 'Homeobox' domain profile. 401 464 IPR001356 GO:0003677
Pral3571g00024 665 CDD homeodomain 404 465 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3571g00024 Pral-Chr3571 1182236 1198733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3571g00024 130 664 Homeobox Transcription Factor Family AT5G41410 45.876 1.00e-138 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral3571g00024 POX 7e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3571g00024 - - cit:102619980 801.201