Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3571g00010 ATGGTGAGGGGAAAAACTCAGATGAAGCGAATCGAGAATGACACGAGCAGGCAAGTGACGTTCTCAAAGAGAAGGAATGGGCTGTTGAAGAAGGCGTTCGAGCTGTCTGTACTGTGTGATGCGGAAGTTGCACTCATAATTTTCTCGCCCAGAGGAAAGCTCTATGAATTCTCCAGTTCTAGTATAAACAAAACAGTTGAACGCTATCAAAAGAAAGTCAAGGACCTGGGTCTCTGCTCCAGAGGAATGCAAGATAACACACAGCAAGGTAAGGATGGAACCATTGGCATACAAAAGAAGCTTGACCATCTTGAAATTTCTAAAAGGAAGCTTTTGGGAGATTGCTTGGACGCATGTTCAGTTGAGGAGTTAAATCAGATAGAGAACCAGTTGGACCGAAGCTTGTCCAAAATTAGGGCACGAAAGAATCAACTGTTCAAGGAGCAGATTGAGCAACTAAGGGAAGAGGAAAAATGCCTTCTAGAAGAAAATAACAAGTTACGAGGCCAGTGTGGGATTGAAAAGCGAGGATCAATGAGGAAAGAGGATGAGAACGAGGTGGTGGTGACAGAGTTGTTCATAGGGCCACCTGAGAGACAAACCCCTGATAAAATCTGCAACACTTGA 627 0.4418 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSINKTVERYQKKVKDLGLCSRGMQDNTQQGKDGTIGIQKKLDHLEISKRKLLGDCLDACSVEELNQIENQLDRSLSKIRARKNQLFKEQIEQLREEEKCLLEENNKLRGQCGIEKRGSMRKEDENEVVVTELFIGPPERQTPDKICNT 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3571g00010 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3571g00010 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3571g00010 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral3571g00010 208 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3571g00010 208 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3571g00010 208 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677|GO:0046983
Pral3571g00010 208 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Pral3571g00010 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral3571g00010 208 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Pral3571g00010 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral3571g00010 208 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Pral3571g00010 208 Coils Coil 124 170 - -
Pral3571g00010 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral3571g00010 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral3571g00010 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3571g00010 Pral-Chr3571 472431 479134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3571g00010 1 198 MADS-box Gene Family AT4G22950 62.679 5.43e-84 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3571g00010 K-box 3.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3571g00010 - - gmx:100782713 273.092