Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3571g00006 ATGGTGAGGGGAAAAACTCAGATGAAGCGAATCGAGAATGACACGAGCAGGCAAGTGACGTTCTCAAAGAGAAGGAATGGGCTGTTGAAGAAGGCGTTCGAGCTGTCTGTACTGTGTGATGCGGAAGTTGCACTCATAATTTTCTCGCCCAGAGGAAAGCTCTATGAATTCTCCAGTTCTAGATGCTACAGTATAAACAAAACAGTTGAACGCTATCAAAAGAAAGTCAAGGACCTGGGTCTCTGCTCCAGAGGAATGCAAGATAACACACAGCAAGGTAAGGATGGAACCATTGGCATACAAAAGAAGCTTGACCATCTTGAAATTTCTAAAAGGAAGCTTTTGGGAGATTGCTTGGACGCATGTTCAGTTGAGGAGTTAAATCAGATAGAGAACCAGTTGGACCGAAGCTTGTCCAAAATTAGGGCACGAAAGAATCAACTGTTCAAGGAGCAGATTGAGCAACTAAGGGAAGAGGAAAAATGCCTTCTAGAAGAAAATAACAAGTTACGAGGCCAGTGTGGGATTGAAAAGCGAGGATCAATGAGGAAAGAGGATGAGAACGAGGTGGTGGTGACAGAGTTGTTCATAGGGCCACCTGAGAGACAAACCCCTGATAAAATCTGCAACACTTGA 636 0.4418 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSRCYSINKTVERYQKKVKDLGLCSRGMQDNTQQGKDGTIGIQKKLDHLEISKRKLLGDCLDACSVEELNQIENQLDRSLSKIRARKNQLFKEQIEQLREEEKCLLEENNKLRGQCGIEKRGSMRKEDENEVVVTELFIGPPERQTPDKICNT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3571g00006 211 Coils Coil 127 173 - -
Pral3571g00006 211 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3571g00006 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral3571g00006 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Pral3571g00006 211 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Pral3571g00006 211 FunFam Agamous-like MADS-box protein AGL13 13 82 - -
Pral3571g00006 211 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Pral3571g00006 211 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pral3571g00006 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral3571g00006 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3571g00006 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3571g00006 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral3571g00006 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral3571g00006 211 Pfam K-box region 90 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3571g00006 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3571g00006 Pral-Chr3571 472424 479134 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3571g00006 1 201 MADS-box Gene Family AT4G22950 61.792 1.02e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3571g00006 K-box 3.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3571g00006 - - gmx:100782713 267.7