Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral356g00004 ATGAGGAGGAGTCCAAGTCGCTCTGGGGAAGTTGGGGGACTGAAAAGAGGAGCATGGACTGCTCAAGAGGACAAGATGCTCACTTCTTACATTGTGGCCCACGGCGAAGGCAAGTGGACCCACGTCCCTCTAAGAGCTGGCTTGAAGAGGAGTGGCAAAAGCTGCAGGCTTCGATGGTTGAACTATCTCAGGCCTGATATCAAGAGAGGTAACATCACCCAAGATGAAGAAGACCTCATTATTAGACTTCATAAACTTCTTGGCAACAGATGGTCTCTTATAGCCGGAAGGATCCCTGGAAGAACAGACAACGAAATCAAGAACTACTGGAACACTACTTTGGCAAAGAAGCTCAGAACACAGTCAGGCGCAGTGTCTGAACAACATCCACCCAGCAAATCAAGCGAGTCTGATGATCTCACTCGACCACAAGTGATCCAAACGAAAGCCGCAAGATGCAAAAACGTGGTTATCCAACGCCCCCCTAACTATGATACTGAGGAAACGTCCACCGCCAACTCTCTAGATTCCAACCAGTTAAGGTTTGACGAAGCTCACCTTGCTCCCCACTTCACGAACCAGCCTCCGCGGGCGGTAGATGAATGTCAGAATTCAGATGTGACCTTGTTGGGTCGTGAACGGAATGATGAGTTTCAAGATGAACTCAACGCCGCAGATATTTTCAGAGAGTTTAACCTCGACAATAGCATGGCCATGGCCGTGACCATGGATGCTCAAGCTGACGAGTTCTCACCTATCGACGAACTTGTCAATTGTGGGACAACTGATGGATTCAGGAACATTGGCACAATGGATCTGGATTTAATGACACTCATGTTGGATTCTGGCTCTTGGGATTGGCCCTGA 867 0.4867 MRRSPSRSGEVGGLKRGAWTAQEDKMLTSYIVAHGEGKWTHVPLRAGLKRSGKSCRLRWLNYLRPDIKRGNITQDEEDLIIRLHKLLGNRWSLIAGRIPGRTDNEIKNYWNTTLAKKLRTQSGAVSEQHPPSKSSESDDLTRPQVIQTKAARCKNVVIQRPPNYDTEETSTANSLDSNQLRFDEAHLAPHFTNQPPRAVDECQNSDVTLLGRERNDEFQDELNAADIFREFNLDNSMAMAVTMDAQADEFSPIDELVNCGTTDGFRNIGTMDLDLMTLMLDSGSWDWP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral356g00004 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pral356g00004 288 Gene3D - 16 68 - -
Pral356g00004 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Pral356g00004 288 CDD SANT 73 114 IPR001005 -
Pral356g00004 288 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pral356g00004 288 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Pral356g00004 288 Gene3D - 72 143 - -
Pral356g00004 288 SMART sant 15 65 IPR001005 -
Pral356g00004 288 SMART sant 68 116 IPR001005 -
Pral356g00004 288 MobiDBLite consensus disorder prediction 120 143 - -
Pral356g00004 288 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Pral356g00004 288 FunFam MYB-related transcription factor 15 68 - -
Pral356g00004 288 CDD SANT 18 63 IPR001005 -
Pral356g00004 288 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pral356g00004 288 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 186 - -
Pral356g00004 288 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral356g00004 Pral-Chr356 31066 32345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral356g00004 13 131 MYB Transcription Factor Family AT3G13540 69.748 4.11e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral356g00004 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral356g00004 K09422 - vvi:100264614 218.394