Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3564g00048 ATGAACAAGGAAAGTACTGTTTATGCTGAAGATGCAAAGTTTCCAGTCCGAATCACTAGAGCAAGGGCCAGAGCCTTGGGATCATTGGGAGGCATACCTCCTTCCTCAAGGCCATCCTTTATGCAAGAACAGAAGCGCGCCCATCCAACGAAGTCCAAAAGAGCAGCATCTGATGAGAACAAAGCTTCGGTCGTTACTATGGACGGTCTCCAGAATAAGAGGAGGGCAGTGCTCAGAGATGTAACCAACATCTGTGAAAATTCAAATGATAAAAGTACTGACGCTTCAAGTTTTCAGGCAAAAGGAGGTAAAAACACAAAGTCAGCTTCAGTTGTATCCACAGAAGCTTCATCGACACAAGAAGACGTTAAAACAAAGTTAGCTGAAGAATTATCCAAAATAAGGATGGTAGAATCACGTAACACCACTAATGCATTTAAGTTAGAAGACAAAATGCCACCACAACGATGCATGTCCAATGGTACAGAAGATTGTCTCTCGGCAGGCCCCATGCTTTCAACGCAGGATTCTGTGATGTCTGATGAGATCCTGACCGCTCCAGATAAAGAAATAGGGAAACTAAGAGCTTCGGATGACTTGGGCATTGTAGACATTGATTCAGAGTTAAAGGATTCTCAAGTTTGGAGTTTATATGCCCCAGATATATACAATAACATACGTGTCACAGAGCTTGAAAGAAGACCATCAACTGATTACATGGAGAAGTTGCAGCAGGATATCAATCCAAACATGCGCGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAGGCTTGTTCCAGATACTCTTTACCTCACTGTGAATCTCATTGACCGGTTTCTCTCTATAAGTTTAACAACGAAACAAAAGCTTCAGCTTGTCGGTGTCGCTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCTCCTCGGGTGGAAGACTTTTGCTTCATCACGGATAATACATACACGAGAGATGAGGTACTGAAAATGGAGAGTGAGGTTTTAAATCTTCTGCATTTTCAATTATCTGTTCCCACCACCAAAACATTTCTCAGGAGATACATCCAAGTAGCACAATGTTCCTACAAGCTTCCCTGTGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACACTTGTTGAATACAGCTTCCTCAAGTTCCTACCTTCCCTTGTTGCTGCATCTGCTATTTTCCTTGCCAGATGGACGCTCAACCAGTCAGAACACCCATGGAGCCCAACTCTAGAGCATTACACAAGTTACAAAACCCCACAACTTAAAGCTAGTGTTCTTGCCCTGGAAGATTTGCAGCTCAATACCAAGTCATGTTCCTTGAATGCGATACGTGAAAAATATAGACTTCAGAAGTTCAAGCGCGTGGCAGCATTGTCTGCAAAATCAGTGCTACCTCTTTTCGGGACTCAATTGTAG 1452 0.427 MNKESTVYAEDAKFPVRITRARARALGSLGGIPPSSRPSFMQEQKRAHPTKSKRAASDENKASVVTMDGLQNKRRAVLRDVTNICENSNDKSTDASSFQAKGGKNTKSASVVSTEASSTQEDVKTKLAEELSKIRMVESRNTTNAFKLEDKMPPQRCMSNGTEDCLSAGPMLSTQDSVMSDEILTAPDKEIGKLRASDDLGIVDIDSELKDSQVWSLYAPDIYNNIRVTELERRPSTDYMEKLQQDINPNMRGILIDWLVEVSEEYRLVPDTLYLTVNLIDRFLSISLTTKQKLQLVGVACMLIASKYEEICAPRVEDFCFITDNTYTRDEVLKMESEVLNLLHFQLSVPTTKTFLRRYIQVAQCSYKLPCVELEFLANYLAELTLVEYSFLKFLPSLVAASAIFLARWTLNQSEHPWSPTLEHYTSYKTPQLKASVLALEDLQLNTKSCSLNAIREKYRLQKFKRVAALSAKSVLPLFGTQL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3564g00048 483 SUPERFAMILY Cyclin-like 211 347 IPR036915 -
Pral3564g00048 483 Pfam Cyclin, C-terminal domain 350 471 IPR004367 -
Pral3564g00048 483 PIRSF Cyclin_A_B_D_E 34 478 IPR046965 GO:0016538|GO:0044772
Pral3564g00048 483 FunFam Mitotic cyclin 6 235 335 - -
Pral3564g00048 483 SUPERFAMILY Cyclin-like 349 473 IPR036915 -
Pral3564g00048 483 Gene3D - 235 348 - -
Pral3564g00048 483 ProSitePatterns Cyclins signature. 252 283 IPR006671 -
Pral3564g00048 483 FunFam Cyclin A1 337 469 - -
Pral3564g00048 483 CDD CYCLIN_AtCycA_like_rpt1 211 346 - -
Pral3564g00048 483 CDD CYCLIN_AtCycA-like_rpt2 350 464 - -
Pral3564g00048 483 SMART Cyclin_C_2 350 473 IPR004367 -
Pral3564g00048 483 Gene3D - 221 469 - -
Pral3564g00048 483 MobiDBLite consensus disorder prediction 86 124 - -
Pral3564g00048 483 MobiDBLite consensus disorder prediction 27 63 - -
Pral3564g00048 483 Pfam Cyclin, N-terminal domain 221 348 IPR006671 -
Pral3564g00048 483 MobiDBLite consensus disorder prediction 44 58 - -
Pral3564g00048 483 PANTHER CYCLINS 161 459 IPR039361 -
Pral3564g00048 483 SMART cyclin_7 354 442 IPR013763 -
Pral3564g00048 483 SMART cyclin_7 257 341 IPR013763 -
Pral3564g00048 483 MobiDBLite consensus disorder prediction 86 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3564g00048 Pral-Chr3564 222749 227895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3564g00048 16 472 Core Cell Cycle Gene Families AT5G25380 54.267 1.33e-157 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3564g00048 K06627 - qsa:O6P43_015635 593.193