Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3564g00045 ATGAACGTTCCCTCACCAAAACTATATCCTGAAGGTTTATACGACACTTGCCCATTGTTGATGGAGCATTCTGGGCCCTTGAACTGCAGTCAGGTCACTATCGACGTAGCTGGGAGTAGTGAAGCTTCCACATCTACCTCTCCGCATGATAGACATTTTAACAGCGGAGGTACATCACAACATGAAGACAGACCTAGTAGTGCAAGATTACCGGCTTCTCTGCCTTCAGTTTCTATTGCATCTAATGGTACAAATCCTAGGAATTCTTCAGTTGTAAGACGAGGGGAGACCCGTCGGAACAGGAGTCCATTGAATTCAGGGTTATGGATATCTATTGAGCTAGTCCTCACAGTAAGCCAGATTGTTGCATCTATTATTGTTTTGTCTTTGTCGAGGCATGAGCATCCACGCACTCCCCTGTTTGCATGGATTATTGGTTATGCGTGTGGATGTGTTGCTACTATCCCCTTGCTTGGTTGGAGGTATTATCATCATAACCAGGGTAGAGAGCTAAATTCATCTCAACCACGTCAAGCTTCCCCTCGAGTTAATGTTTCTTCAAGGACACTTCTTTCTGTTTCAAGAACTAATGGGGAAGAAGACGATCAGGCCGTTGTTTCATCCTCTAGAAGCAGTCAACATCCAGTCATGATGAATCCAAGCAGACTGAAGTCACTAGTGGAATATTTCAAAATGGCCTTAGATTGCTTTTTTGCTGTATGGTTCGTTGTTGGCAATGTGTGGATCTTTGGGGGGAACTCCTCTGCTACTGATGCTCCTAATATGTATAGGTTATGTATTGTGTTTCTGACATTCAGCTGCATTGGCTATGCTATGCCCTTCATTTTATGTGCAACAATCTGCTGTTGTCTGCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATCTGACACAGACAAGGGGGGCAACATCTGAATCTATTAATTCCTTGCCAGTATACAAGTTCAAGGTGAAGAAACGTAAAAAAGGTGATGAAAGCAACTCAAATGCTTTAGAAGGTGGGATTGTGGCTGCTGGAACTGAAAAGGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAGTTGCCATGTTCCCATCTTTTTCACAAAGACTGTGTAGACAAGTGGCTGAAGATTAATGCATTATGCCCTCTCTGCAAAAGTGAGGTTGGTGGGAACCCAATAGGACCAGTCTCCGGCGAAGGTTCCAACCAACAAAGGGGTGAGAACCGAGTTGGAGTTAGCCCAATCAATAGCATAGTATAA 1311 0.4409 MNVPSPKLYPEGLYDTCPLLMEHSGPLNCSQVTIDVAGSSEASTSTSPHDRHFNSGGTSQHEDRPSSARLPASLPSVSIASNGTNPRNSSVVRRGETRRNRSPLNSGLWISIELVLTVSQIVASIIVLSLSRHEHPRTPLFAWIIGYACGCVATIPLLGWRYYHHNQGRELNSSQPRQASPRVNVSSRTLLSVSRTNGEEDDQAVVSSSRSSQHPVMMNPSRLKSLVEYFKMALDCFFAVWFVVGNVWIFGGNSSATDAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTRGATSESINSLPVYKFKVKKRKKGDESNSNALEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGGNPIGPVSGEGSNQQRGENRVGVSPINSIV 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3564g00045 436 ProSiteProfiles Zinc finger RING-type profile. 361 402 IPR001841 -
Pral3564g00045 436 MobiDBLite consensus disorder prediction 39 102 - -
Pral3564g00045 436 FunFam E3 ubiquitin-protein ligase 344 409 - -
Pral3564g00045 436 SUPERFAMILY RING/U-box 353 405 - -
Pral3564g00045 436 MobiDBLite consensus disorder prediction 195 217 - -
Pral3564g00045 436 MobiDBLite consensus disorder prediction 412 436 - -
Pral3564g00045 436 Pfam Ring finger domain 361 402 IPR001841 -
Pral3564g00045 436 SMART ring_2 361 401 IPR001841 -
Pral3564g00045 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 407 IPR013083 -
Pral3564g00045 436 MobiDBLite consensus disorder prediction 39 91 - -
Pral3564g00045 436 MobiDBLite consensus disorder prediction 413 436 - -
Pral3564g00045 436 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 29 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3564g00045 Pral-Chr3564 212676 216013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3564g00045 13 406 C3H Transcription Factor Family AT1G80400 52.195 8.26e-143 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3564g00045 - - gmx:100778728 612.838