Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3564g00044 ATGAACGTTCCCTCACCAAAACTATATCCTGAAGGTTTATACGACACTTGCCCATTGTTGATGGAGCATTCTGGGCCCTTGAACTGCAGTCAGGTCACTATCGACGTAGCTGGGAGTAGTGAAGCTTCCACATCTACCTCTCCGCATGATAGACATTTTAACAGCGGAGGTACATCACAACATGAAGACAGACCTAGTAGTGCAAGATTACCGGCTTCTCTGCCTTCAGTTTCTATTGCATCTAATGGTACAAATCCTAGGAATTCTTCAGTTGTAAGACGAGGGGAGACCCGTCGGAACAGGAGTCCATTGAATTCAGGGTTATGGATATCTATTGAGCTAGTCCTCACAGTAAGCCAGATTGTTGCATCTATTATTGTTTTGTCTTTGTCGAGGCATGAGCATCCACGCACTCCCCTGTTTGCATGGATTATTGGTTATGCGTGTGGATGTGTTGCTACTATCCCCTTGCTTGGTTGGAGGTATTATCATCATAACCAGGGTAGAGAGCTAAATTCATCTCAACCACGTCAAGCTTCCCCTCGAGTTAATGTTTCTTCAAGGACACTTCTTTCTGTTTCAAGAACTAATGGGGAAGAAGACGATCAGGCCGTTGTTTCATCCTCTAGAAGCAGTCAACATCCAGTCATGATGAATCCAAGACTGAAGTCACTAGTGGAATATTTCAAAATGGCCTTAGATTGCTTTTTTGCTGTATGGTTCGTTGTTGGCAATGTGTGGATCTTTGGGGGGAACTCCTCTGCTACTGATGCTCCTAATATGTATAGGTTATGTATTGTGTTTCTGACATTCAGCTGCATTGGCTATGCTATGCCCTTCATTTTATGTGCAACAATCTGCTGTTGTCTGCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATCTGACACAGACAAGGGGGGCAACATCTGAATCTATTAATTCCTTGCCAGTATACAAGTTCAAGGTGAAGAAACGTAAAAAAGGTGATGAAAGCAACTCAAATGCTTTAGAAGGTGGGATTGTGGCTGCTGGAACTGAAAAGGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAGTTGCCATGTTCCCATCTTTTTCACAAAGACTGTGTAGACAAGTGGCTGAAGATTAATGCATTATGCCCTCTCTGCAAAAGTGAGGTTGGTGGGAACCCAATAGGACCAGTCTCCGGCGAAGGTTCCAACCAACAAAGGGGTGAGAACCGAGTTGGAGTTAGCCCAATCAATAGCATAGTATAA 1308 0.4404 MNVPSPKLYPEGLYDTCPLLMEHSGPLNCSQVTIDVAGSSEASTSTSPHDRHFNSGGTSQHEDRPSSARLPASLPSVSIASNGTNPRNSSVVRRGETRRNRSPLNSGLWISIELVLTVSQIVASIIVLSLSRHEHPRTPLFAWIIGYACGCVATIPLLGWRYYHHNQGRELNSSQPRQASPRVNVSSRTLLSVSRTNGEEDDQAVVSSSRSSQHPVMMNPRLKSLVEYFKMALDCFFAVWFVVGNVWIFGGNSSATDAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTRGATSESINSLPVYKFKVKKRKKGDESNSNALEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGGNPIGPVSGEGSNQQRGENRVGVSPINSIV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3564g00044 435 MobiDBLite consensus disorder prediction 39 102 - -
Pral3564g00044 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 406 IPR013083 -
Pral3564g00044 435 MobiDBLite consensus disorder prediction 412 435 - -
Pral3564g00044 435 FunFam E3 ubiquitin-protein ligase 343 408 - -
Pral3564g00044 435 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 29 404 - -
Pral3564g00044 435 SMART ring_2 360 400 IPR001841 -
Pral3564g00044 435 MobiDBLite consensus disorder prediction 39 91 - -
Pral3564g00044 435 MobiDBLite consensus disorder prediction 195 215 - -
Pral3564g00044 435 Pfam Ring finger domain 360 401 IPR001841 -
Pral3564g00044 435 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Pral3564g00044 435 MobiDBLite consensus disorder prediction 411 435 - -
Pral3564g00044 435 SUPERFAMILY RING/U-box 352 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3564g00044 Pral-Chr3564 212676 216013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3564g00044 13 405 C3H Transcription Factor Family AT1G80400 52.323 2.94e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3564g00044 - - gmx:100778728 617.076