Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3564g00043 ATGGAGCATTCTGGGCCCTTGAACTGCAGTCAGGTCACTATCGACGTAGCTGGGAGTAGTGAAGCTTCCACATCTACCTCTCCGCATGATAGACATTTTAACAGCGGAGGTACATCACAACATGAAGACAGACCTAGTAGTGCAAGATTACCGGCTTCTCTGCCTTCAGTTTCTATTGCATCTAATGGTACAAATCCTAGGAATTCTTCAGTTGTAAGACGAGGGGAGACCCGTCGGAACAGGAGTCCATTGAATTCAGGGTTATGGATATCTATTGAGCTAGTCCTCACAGTAAGCCAGATTGTTGCATCTATTATTGTTTTGTCTTTGTCGAGGCATGAGCATCCACGCACTCCCCTGTTTGCATGGATTATTGGTTATGCGTGTGGATGTGTTGCTACTATCCCCTTGCTTGGTTGGAGGTATTATCATCATAACCAGGGTAGAGAGCTAAATTCATCTCAACCACGTCAAGCTTCCCCTCGAGTTAATGTTTCTTCAAGGACACTTCTTTCTGTTTCAAGAACTAATGGGGAAGAAGACGATCAGGCCGTTGTTTCATCCTCTAGAAGCAGTCAACATCCAGTCATGATGAATCCAAGCAGACTGAAGTCACTAGTGGAATATTTCAAAATGGCCTTAGATTGCTTTTTTGCTGTATGGTTCGTTGTTGGCAATGTGTGGATCTTTGGGGGGAACTCCTCTGCTACTGATGCTCCTAATATGTATAGGTTATGTATTGTGTTTCTGACATTCAGCTGCATTGGCTATGCTATGCCCTTCATTTTATGTGCAACAATCTGCTGTTGTCTGCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATCTGACACAGACAAGGGGGGCAACATCTGAATCTATTAATTCCTTGCCAGTATACAAGTTCAAGGTGAAGAAACGTAAAAAAGGTGATGAAAGCAACTCAAATGCTTTAGAAGGTGGGATTGTGGCTGCTGGAACTGAAAAGGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAGTTGCCATGTTCCCATCTTTTTCACAAAGACTGTGTAGACAAGTGGCTGAAGATTAATGCATTATGCCCTCTCTGCAAAAGTGAGGTTGGTGGGAACCCAATAGGACCAGTCTCCGGCGAAGGTTCCAACCAACAAAGGGGTGAGAACCGAGTTGGAGTTAGCCCAATCAATAGCATAGTATAA 1251 0.442 MEHSGPLNCSQVTIDVAGSSEASTSTSPHDRHFNSGGTSQHEDRPSSARLPASLPSVSIASNGTNPRNSSVVRRGETRRNRSPLNSGLWISIELVLTVSQIVASIIVLSLSRHEHPRTPLFAWIIGYACGCVATIPLLGWRYYHHNQGRELNSSQPRQASPRVNVSSRTLLSVSRTNGEEDDQAVVSSSRSSQHPVMMNPSRLKSLVEYFKMALDCFFAVWFVVGNVWIFGGNSSATDAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTRGATSESINSLPVYKFKVKKRKKGDESNSNALEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGGNPIGPVSGEGSNQQRGENRVGVSPINSIV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3564g00043 416 SUPERFAMILY RING/U-box 333 385 - -
Pral3564g00043 416 FunFam E3 ubiquitin-protein ligase 324 389 - -
Pral3564g00043 416 MobiDBLite consensus disorder prediction 175 197 - -
Pral3564g00043 416 MobiDBLite consensus disorder prediction 392 416 - -
Pral3564g00043 416 Pfam Ring finger domain 341 382 IPR001841 -
Pral3564g00043 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 387 IPR013083 -
Pral3564g00043 416 MobiDBLite consensus disorder prediction 393 416 - -
Pral3564g00043 416 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 9 385 - -
Pral3564g00043 416 SMART ring_2 341 381 IPR001841 -
Pral3564g00043 416 MobiDBLite consensus disorder prediction 1 82 - -
Pral3564g00043 416 MobiDBLite consensus disorder prediction 1 71 - -
Pral3564g00043 416 ProSiteProfiles Zinc finger RING-type profile. 341 382 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3564g00043 Pral-Chr3564 212676 216849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3564g00043 34 386 C3H Transcription Factor Family AT1G80400 56.704 3.31e-143 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3564g00043 - - gmx:100778728 603.594