LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3564g00016	ATGCCAGGTTTGACATGTAATGCTTGCAACAAAGAATTCAGCGACGATGCAGAGCAAAAGCTTCATTACAGATCGGAGTGGCACCGATACAATCTCAAGCGCAAGGTGGCCGGCGTTCCTGGGGTGACAGAAGCACTGTTCATGGCCAGACAGTCTGCAGCTGCTCAAGAGAAAGATAAAAATGAAACTCCCATGCTCTATAGCTGTGGCCTTTGTGGAAAAAGTTATAAGAGTTCTAAGGCTCATGCTGAGCATCTCAAATCCCGTGGTCATTTGATGCGGGCATCTCAAGGAAGTAGTCATTCAGATGACAAGGCAATAGTCAAGCCGCTACCACAACGTGTAGTGAATAGACCTCTTCCCAGAAGAGATGTAGACAATGATGAAAGTGAAGGAAGTGAAGATGAATGGGAGGAGGTTGATCCTGAGGATCCTTCGATCAATGATGCTTCAACGTCCTTGACTGGTTTGAATGTGAATGAGCATGATGACAATGTTGATATGGACGAAGATGATGATGATGATGATTATGGGGATTTGGATCCGTCATGCTGTTTTATGTGTGATCAAAAGCATGATACTATAGAGAGTTGCATTGTTCACCTGCACAAGCAGCATGGGTTCTTCGTTCCAGATGTTGAGTATTTAAAGGATCCAAAAGGCCTGCTTACCTACCTAGGCCTCAAGGTCATGAGGGATTATATGTGTCTTTACTGCAATGATAGATGCCATCCTTTCAGCAGCCTGGAAGCAGTTAGGAAACACATGGCGGCCAAAAGTCACTGTAAAGTGCATTATGGTGATGATGATGATGACGAGGAAGTGGAGCTGGAAGAATTCTATGACTATAGCAGCAGTTATGTGGATGAGCAAGGGAAGCAACTAGTTGCATCAGGTGAGACGGCCAACAGCGTAGAACTTGGCAGCTGTGGATCAGAGCTTGTGATCACTAAGAAATCAAATGATGGAATATCAACTAGAGCACTTGGCGCTCGTGAATTTTTGCGTTATTATCGTCAAAAGCCCCGTCCATCACACACAAATAACATGGCTGTTGCTGCGGCATTGGCTTCAAGGTACAGGAACATGGGTTTGGCGACTGTGCAATCAAGGGAGCATATGGTGAGGATGAAAGTGCTGAAGGAAATTAATAGGTCTGGCGTGGAAGCCATGCGTTCTAAAATAGGGATGAAAAGTAACGTCATCCGGAACTTGCCAAAGAATGTTCCGTATTAG	1236	0.4498	MPGLTCNACNKEFSDDAEQKLHYRSEWHRYNLKRKVAGVPGVTEALFMARQSAAAQEKDKNETPMLYSCGLCGKSYKSSKAHAEHLKSRGHLMRASQGSSHSDDKAIVKPLPQRVVNRPLPRRDVDNDESEGSEDEWEEVDPEDPSINDASTSLTGLNVNEHDDNVDMDEDDDDDDYGDLDPSCCFMCDQKHDTIESCIVHLHKQHGFFVPDVEYLKDPKGLLTYLGLKVMRDYMCLYCNDRCHPFSSLEAVRKHMAAKSHCKVHYGDDDDDEEVELEEFYDYSSSYVDEQGKQLVASGETANSVELGSCGSELVITKKSNDGISTRALGAREFLRYYRQKPRPSHTNNMAVAAALASRYRNMGLATVQSREHMVRMKVLKEINRSGVEAMRSKIGMKSNVIRNLPKNVPY	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3564g00016	411	ProSitePatterns	Zinc finger C2H2 type domain signature.	6	28	IPR013087	-
	Pral3564g00016	411	SMART	c2h2final6	183	206	IPR013087	-
	Pral3564g00016	411	SMART	c2h2final6	234	261	IPR013087	-
	Pral3564g00016	411	SMART	c2h2final6	67	91	IPR013087	-
	Pral3564g00016	411	SMART	c2h2final6	4	28	IPR013087	-
	Pral3564g00016	411	MobiDBLite	consensus disorder prediction	146	160	-	-
	Pral3564g00016	411	Gene3D	Classic Zinc Finger	4	89	-	-
	Pral3564g00016	411	ProSitePatterns	Zinc finger C2H2 type domain signature.	69	91	IPR013087	-
	Pral3564g00016	411	PANTHER	ZINC FINGER PROTEIN 622	2	410	IPR040025	-
	Pral3564g00016	411	SMART	ZnF_U1_5	1	35	IPR003604	GO:0003676\|GO:0008270
	Pral3564g00016	411	Pfam	C2H2 type zinc-finger (2 copies)	185	286	IPR041661	-
	Pral3564g00016	411	MobiDBLite	consensus disorder prediction	129	145	-	-
	Pral3564g00016	411	ProSiteProfiles	Zinc finger C2H2 type domain profile.	67	96	IPR013087	-
	Pral3564g00016	411	SUPERFAMILY	beta-beta-alpha zinc fingers	66	97	IPR036236	-
	Pral3564g00016	411	SUPERFAMILY	beta-beta-alpha zinc fingers	169	230	IPR036236	-
	Pral3564g00016	411	MobiDBLite	consensus disorder prediction	83	175	-	-
	Pral3564g00016	411	SUPERFAMILY	beta-beta-alpha zinc fingers	3	36	IPR036236	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3564g00016	1	411	C2H2 Transcription Factor Family	AT4G31420	64.423	0.0	511

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Pral3564g00016		zf-C2H2_2	1.2e-24	CL0361

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3564g00016	K14816		-	zju:107420801	622.854