Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3564g00012 ATGCCCGTCGACAAGGCCATCAGTCTCGACGAGATCAAAAATGAGAACGTCGATTTGGAAAAAATTCCAATAGAGGAAGTGTTTGAGCAGCTGAAATGTTCAAGAACAGGTCTATCCTCAGACGAAGGAGCCAATCGGCTTCAAGTGTTCGGACCAAACAAATTGGAAGAGAAAAAGGAAAGCAAACTTTTGAAGTTCTTGGGTTTCATGTGGAACCCTCTGTCATGGGTCATGGAAGCTGCTGCAATAATGGCCATTGCTATGGCCAATGGAGGAGGAAGACCTCCAGATTGGCAAGACTTCGTCGGAATCATTGTTCTACTGCTCGTCAACTCTACAATCAGTTTTATCGAAGAAAATAATGCTGGAAATGCCGCTGCTGCACTTATGGCTGGTTTAGCTCCCAAGACCAAGGTTCTGAGAGATGGTCAGTGGAATGAACAAGATGCTGCAATTTTAGTCCCAGGAGATATAATCAGCATCAAACTAGGAGATATTATCCCAGCTGATGCACGTCTTCTGGAGGGTGATGCTTTAAGTGTTGATCAGTCTGCTTTAACTGGAGAGTCTCTTCCTGCAACCAAAAACCCATCGGATGAAGTATTTTCTGGATCAACTGTTAAAAAGGGTGAGATTGAAGCAGTTGTGATTGCCACTGGTGTTCACACCTTCTTTGGTAAAGCTGCTCATTTGGTGGATAGCACCAACCAAGTTGGTCACTTCCAGAAAGTCCTCACAGCCATTGGTAACTTCTGTATTTGTTCAATCGCTGTTGGGATACTGATTGAGATCATCGTGATGTACCCAATACAGCATCGCAAGTATAGGGATGGAATCGACAATCTCTTGGTTCTGTTGATCGGAGGAATCCCAATTGCCATGCCTACTGTATTGTCGGTGACAATGGCCATCGGTTCTCATAGATTGTCTCAACAAGGTGCAATCACTAAGAGAATGACTGCTATTGAGGAAATGGCAGGCATGGATGTTCTGTGCAGTGACAAGACTGGGACTCTCACATTGAATAAGCTAAGTGTTGACAGGAACTTGATTGAAGTGTTTGCTAAGGGTGTGGAGAAGGAGTTTGTGATGCTTCTTGCAGCAAGGGCTTCCAGAACTGAGAATCAGGATGCCATAGATGCTGCAATTGTTGGGATGCTGGCTGATCCGAAGGAGGCTCGAGCTGGAATCCGGGAGGTTCACTTTCTGCCATTTAATCCCGTGGACAAGAGGACTGCTCTTACATACATTGAGTCAGACGGAAGTTGGCATAGGGCTAGTAAAGGTGCTCCCGAGCAGATTTTGAACCTTTGCAACTGCAAAGAGGATGTGAGGAAGAGGGTTCATACATGTATTGATAAGTTTGCTGAGCGTGGACTTCGTTCTTTAGCTGTTGCAAGACAGCAAGTGCCAGAAAAGTCGAAAGATGCTCCAGGGGCACCATGGCAATTTGTTGGTTTGCTACCCCTCTTTGATCCTCCTAGGCATGACAGCGCTGAGACCATCAAACGAGCTCTTCACCTTGGTGTCAATGTCAAGATGATTACTGGTGATCAGCTTGCCATTGCCAAGGAAACTGGGCGAAGGCTTGGAATGGGGACAAACATGTACCCATCTTCTTCACTGCTGGGAGGAGAAAAGGATGCTACTGTTTCAGCTCTTCCGGTTGACGAATTGATTGAGAAGGCTGATGGATTTGCAGGAGTCTTTCCTGAGCATAAGTATGAAATAGTGAAAAGACTGCAAGAGAGGAAGCATATATGTGGAATGACAGGAGATGGTGTGAATGATGCGCCTGCATTGAAGAGAGCAGATATTGGAATTGCTGTTGCTGATGCGACGGATGCTGCCAGGAGTGCTTCTGATATTGTCCTCACTGAGCCTGGTTTGAGTGTCATTGTCAGTGCAGTGCTCACTAGCAGGGCTATTTTCCAGAGGATGAAGAACTACACTATTTATGCTGTGTCCATCACTATTCGTATCGTGTTTGGTTTCTTGTTTATTGCGTTGATCTGGAAGTTTGATTTTGCACCCTTCATGGTTCTGATTATTGCCATACTAAATGACGGAACCATTATGACAATATCCAAGGATCGAGTGAAGCCATCCCCACAGCCCGACAGTTGGAAACTGAAGGAGATATTTGCTACCGGCGTTGTGCTTGGTGGTTACTTGGCACTAATGACAGTTGTATTTTTCTGGGCTATATATGATACCGACTTCTTCTCGGACAAGTTTGGCGTGAGGTCTCTGAGACACAGACCCAATGAAATGATGGCGGCCTTGTACCTACAAGTCAGTATTATCAGCCAGGCCTTAATTTTTGTCACTAGGTCTCGTAGCTGGTCCTTTGTTGAAAGACCCGGTCTTCTCCTTCTAAGTGCTTTCTTAATTGCTCAGCTGGTAGCAACTTTGATTGCTGTGTATGCACACTGGGAATTCGCAAGGATTAAGGGAATGGGATGGGGATGGGCTGGTGTAATCTGGCTCTACAGTATAGTGACATATATCCCTCTTGATTTGCTCAAATTTGCTATCCGCTACGGTCTCAGTGGAAAGGCTTGGGACAATATTTTGGAGAACAAGACTGCCTTCACCACCAAGAAAGATTATGGGAAAGAAGAGAGAGAAGCACAGTGGGCAGCCGCACAGAGAACTCTTCATGGTCTTCAGCCACCAGAAACTACAAACCTTTTCAATGACAAAAATAGCTACAGGGAGCTTTCAGAGATTGCAGAGCAAGCCAAGCGACGAGCTGAGGTTGCAAGGCTAAGGGAGCTACACACTCTTAAGGGACACGTTGAGTCAGTGGTGAAGCTGAAGGGACTTGACATTGATACAATTCAGCAGCATTATACAGTGTAA 2865 0.4555 MPVDKAISLDEIKNENVDLEKIPIEEVFEQLKCSRTGLSSDEGANRLQVFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIAMANGGGRPPDWQDFVGIIVLLLVNSTISFIEENNAGNAAAALMAGLAPKTKVLRDGQWNEQDAAILVPGDIISIKLGDIIPADARLLEGDALSVDQSALTGESLPATKNPSDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFAKGVEKEFVMLLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIESDGSWHRASKGAPEQILNLCNCKEDVRKRVHTCIDKFAERGLRSLAVARQQVPEKSKDAPGAPWQFVGLLPLFDPPRHDSAETIKRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGGEKDATVSALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGGYLALMTVVFFWAIYDTDFFSDKFGVRSLRHRPNEMMAALYLQVSIISQALIFVTRSRSWSFVERPGLLLLSAFLIAQLVATLIAVYAHWEFARIKGMGWGWAGVIWLYSIVTYIPLDLLKFAIRYGLSGKAWDNILENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPETTNLFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3564g00012 954 Gene3D - 344 491 IPR023299 GO:0000166
Pral3564g00012 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 334 340 IPR018303 -
Pral3564g00012 954 NCBIfam HAD-IC family P-type ATPase 566 681 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral3564g00012 954 NCBIfam HAD-IC family P-type ATPase 104 348 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral3564g00012 954 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Pral3564g00012 954 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral3564g00012 954 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral3564g00012 954 PRINTS H+-transporting ATPase (proton pump) signature 763 784 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral3564g00012 954 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral3564g00012 954 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral3564g00012 954 SFLD Haloacid Dehalogenase 314 643 - -
Pral3564g00012 954 SUPERFAMILY HAD-like 328 638 IPR036412 -
Pral3564g00012 954 Coils Coil 905 925 - -
Pral3564g00012 954 FunFam ATPase 4 plasma membrane-type 576 818 - -
Pral3564g00012 954 Gene3D - 903 954 - -
Pral3564g00012 954 Gene3D - 97 818 - -
Pral3564g00012 954 Gene3D - 329 628 IPR023214 -
Pral3564g00012 954 FunFam Plasma membrane ATPase 135 219 - -
Pral3564g00012 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 848 IPR023298 -
Pral3564g00012 954 Gene3D - 135 219 - -
Pral3564g00012 954 FunFam Plasma membrane ATPase 344 491 - -
Pral3564g00012 954 Pfam haloacid dehalogenase-like hydrolase 328 605 - -
Pral3564g00012 954 SFLD p-type atpase 314 643 IPR044492 -
Pral3564g00012 954 PANTHER CALCIUM-TRANSPORTING ATPASE 20 886 - -
Pral3564g00012 954 FunFam Plasma membrane ATPase 484 639 - -
Pral3564g00012 954 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Pral3564g00012 954 Pfam E1-E2 ATPase 134 311 - -
Pral3564g00012 954 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
Pral3564g00012 954 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Pral3564g00012 954 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Pral3564g00012 954 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Pral3564g00012 954 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
Pral3564g00012 954 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Pral3564g00012 954 NCBIfam plasma-membrane proton-efflux P-type ATPase 37 809 IPR006534 GO:0008553|GO:0016020|GO:0120029
Pral3564g00012 954 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Pral3564g00012 954 CDD P-type_ATPase_H 37 844 IPR006534 GO:0008553|GO:0016020|GO:0120029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3564g00012 Pral-Chr3564 50335 56555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3564g00012 7 954 Primary Pumps ATPases AT2G07560 83.966 0.0 1628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3564g00012 K01535 - gmx:547525 1709.12