Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral3564g00006 | ATGGATATATATGCTGGTAAAAGAGCTGTTGATAGGAATGTGGTCTCTAGAAAGGGAGCGCCTCATTTATTCAGAAATGCTGTTAATACAAAGGATCAAAGTGGTCAGTTGTGCAGCCGACCTAATTGTAGTAGCAGGATTCACTCTTCTATAGTTGCTGAGAATGTTTCCTGTAGAAAAGGTAAATCTTTGAGGCCGTCAACCCAATCCTCTTTAAGTGGCAAGGAAGCAATTGGAAGATCCTGTAGAAGTTTCTCAGGAACTAGTAATCCAAGGAAGTCCCTTAATGTGCCTCGGCAAACACTATCCTCAAGGTTAGAGACAGATTCATCTGAAACTAGCAGCATAAAGGATGAAGCTGAAAGCCCTCCATCTGCTACTTATCAAAGTCGGCTTCAAGCTGAGCAAGGACATGCAGAGTCTGATAACGTGATGCTGATGGAAGTAGCAAGCACTAGTGGAGTTTCGAAAACAAGGTCCCAAAGGAATCTTCGTCAACCTGGATTGCATGGTCAGGAAACTAAAAGCATTGGCTCAGTGACACGTGCTGGTACCAGCCGATATAATTTGAGGAACACCAAGTGCAACTCAGTAAATGATGTCAGCTCCACAAGTTGTTCCTCTTCAGATTCAATCATGAGTGGAGGGAAGGATATGGTGAAGAGAAGAAATTATGAAAGGGAAAATAGTTCCACTGCCAGGGGGAAGAAGTCGAGTGGGTCTTTATTGGAAAGACAGAATTCTGGTTCTGGAAGTGGCATATCTATTTATGATCCAAGAAGATCAAGAAATACTCCTCCTCACAGGGACAACATTGCATCAGTTAGAACTCGAAGGTCTATGGGAGGTAATGCTAGGGAAAGGCTTCCAAGCCATGGAAATGCACACTCTATGCAGCCCAATGAATCCCCTGCTTTGAGACCATCTGTGTCTCGTGAACTTGTCTTCCCACATCATACTTCTGCAGAGGCTCCTTTAATTCAATCGAGCTCCCATGGTAGACCAGGTTCAAGAAGCGGGCAGCCTGCATCTCCTGCAGAATTTGACATCACTTATCCTCTGACAAATCGAAGTAGACAACAGCACCAAAACAGTGTTGCTGAGGTACTATTCGCACTTGAGAGGATTGAACAAGATGAAGAGCTGACAGAGGAGGAAATTCGTTTTCTAGAGACCAATTTCCTCCTTAATGGACTATACTCGTATGATCAGCATAGAGACATGCGTATGGATATTGATAATATGTCATATGAGGAACTATTAGCCCTGGAAGAAAGGATGGGTACTGTGAGCACAGCTTTAACAGAGGAAGCACTGTCAGAATGCCTTAAAAGAAGCATCTATCAGCCTACACCTTCGGATGATGACGATGAGAGTAGCAGTATTATTAATGACGATATCAAATGCAGCATCTGCCAGGATGAATATGTGGCTGGAGATGAAGTGGGGAGCCTGCATTGTGAGCATGGATATCATGTGGGCTGCATACAACAATGGCTTCGCCACAAGAACTGGTGTCCTATCTGCAAAGCATCAGCAGTACCTTCAGATTCATCTGTTGCCTCTGATCAGGCCTGA | 1578 | 0.4411 | MDIYAGKRAVDRNVVSRKGAPHLFRNAVNTKDQSGQLCSRPNCSSRIHSSIVAENVSCRKGKSLRPSTQSSLSGKEAIGRSCRSFSGTSNPRKSLNVPRQTLSSRLETDSSETSSIKDEAESPPSATYQSRLQAEQGHAESDNVMLMEVASTSGVSKTRSQRNLRQPGLHGQETKSIGSVTRAGTSRYNLRNTKCNSVNDVSSTSCSSSDSIMSGGKDMVKRRNYERENSSTARGKKSSGSLLERQNSGSGSGISIYDPRRSRNTPPHRDNIASVRTRRSMGGNARERLPSHGNAHSMQPNESPALRPSVSRELVFPHHTSAEAPLIQSSSHGRPGSRSGQPASPAEFDITYPLTNRSRQQHQNSVAEVLFALERIEQDEELTEEEIRFLETNFLLNGLYSYDQHRDMRMDIDNMSYEELLALEERMGTVSTALTEEALSECLKRSIYQPTPSDDDDESSSIINDDIKCSICQDEYVAGDEVGSLHCEHGYHVGCIQQWLRHKNWCPICKASAVPSDSSVASDQA | 525 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral3564g00006 | 525 | SMART | ring_2 | 469 | 509 | IPR001841 | - | |
| Pral3564g00006 | 525 | MobiDBLite | consensus disorder prediction | 151 | 185 | - | - | |
| Pral3564g00006 | 525 | Pfam | Ring finger domain | 468 | 510 | IPR001841 | - | |
| Pral3564g00006 | 525 | FunFam | E3 ubiquitin-protein ligase arkadia | 431 | 515 | - | - | |
| Pral3564g00006 | 525 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 453 | 523 | IPR013083 | - | |
| Pral3564g00006 | 525 | MobiDBLite | consensus disorder prediction | 61 | 138 | - | - | |
| Pral3564g00006 | 525 | MobiDBLite | consensus disorder prediction | 197 | 309 | - | - | |
| Pral3564g00006 | 525 | SUPERFAMILY | RING/U-box | 462 | 515 | - | - | |
| Pral3564g00006 | 525 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 74 | 513 | IPR045191 | GO:0061630 | |
| Pral3564g00006 | 525 | MobiDBLite | consensus disorder prediction | 197 | 214 | - | - | |
| Pral3564g00006 | 525 | ProSiteProfiles | Zinc finger RING-type profile. | 469 | 510 | IPR001841 | - | |
| Pral3564g00006 | 525 | MobiDBLite | consensus disorder prediction | 323 | 348 | - | - | |
| Pral3564g00006 | 525 | Coils | Coil | 373 | 393 | - | - | |
| Pral3564g00006 | 525 | MobiDBLite | consensus disorder prediction | 323 | 338 | - | - | |
| Pral3564g00006 | 525 | MobiDBLite | consensus disorder prediction | 234 | 259 | - | - | |
| Pral3564g00006 | 525 | MobiDBLite | consensus disorder prediction | 262 | 285 | - | - | |
| Pral3564g00006 | 525 | MobiDBLite | consensus disorder prediction | 117 | 137 | - | - | |
| Pral3564g00006 | 525 | MobiDBLite | consensus disorder prediction | 216 | 233 | - | - | |
| Pral3564g00006 | 525 | MobiDBLite | consensus disorder prediction | 61 | 110 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral3564g00006 | Pral-Chr3564 | 28047 | 32405 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral3564g00006 | 359 | 514 | C3H Transcription Factor Family | AT2G15530 | 41.772 | 1.85e-31 | 127 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral3564g00006 | - | - | gmx:100787213 | 515.383 |