Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3563g00054 ATGTATCACCGAGTTCAAGGATTTTTGGAAGGGATCATGATCTGGTTTATTATGCCTGCAATTAGAAGCTCTCATGCTGATCACACCAACAATGCTCTTGTACTGATTGTTCTTCTTCAATACGTTCCCAGATTATATCTGATTTTCCCCTTAAGTTCTCAGATTATCAAAGCCACTGGTGTAGTCACAAAGACAGCTTGGGCTGGAGCTGCTTATAATCTTTTACTTTACATGTTGGCTAGCCATGTGTTGGGGGCATCATGGTACTTGTTGTCAATTGAAAGGAATTCCACGTGTTGGAAATCACAATGCAAGAATGAAACTTTCCCCATGAAATGTGTTCTTCAATACTTGGATTGCAGCACTTTAAACGATGATGATCGCATGAAGTGGGTAAACAATACTTCCGTGTTTGATAACTGCAATCCGAATAATGACATCAGTTTCAAGTATGGCATTTTTGGACCTGCAGTTGAAAACAATGTCGTTTCCTCACAGTTTGTAGAGAAGTATCTCTATTGTCTATGGTGGGGCTTGCAAAACTTGAGTTCCTATGGCCAGAATTTGAGTACAAGCACCTTCATTTGGGAAACTACATTTGCCATACTTATAGCTATCCTGGGTCTAGTTTTGTTTGCCCACTTAATTGGAAACATGCAGACATATCTGCAATCTATCACTGTAAGGCTTGAAGAGTGGAGGCTGAAGCGACGTGATACTGAAGAATGGATGAGACACCGTCAACTGCCACAAAATCTAAGAGAACGTGTTCGAAGATTTGTTCAATACAAGTGGCTTGCAACTCGAGGAGTTGATGAAGAAGCTATCTTGCGGGGCCTTCCCTTAGACTTGCGTAGAGATATCCAACGCCACCTTTGCTTGGATCTTGTTCGACGTGTCCCTTTTTTCTCACAAATGGATGATCAATTGCTTGATGCAATATGTGAGAGATTGGTTTCATGTTTGAATATTCAAGGCACTTACATTGTCCGAGAAGGAGATCCTGTCACAGAGATGCTTTTCATCATAAGAGGAAGACTTGAAAGCTCAACTACAAATGGAGGCAGAACAGGTTTCTTTAACTCAATTACATTAAGACCAAGTGATTTCTGTGGAGAAGAGCTTCTAGCATGGGCTTTGCTTCCAAAATCTACTTCCAATTTGCCCTCTTCAACTAGAACAGTGAAAGCCCTCGTTGAAGTGGAAGCCTTTGCACTAAGAGCTGAGGATCTTAAGTTTGTTGCCAATCAGTTTCGACGTCTTCACAGCAAAAAGTTGCAACACACCTTTCGTTTCTACTCTCACCATTGGAGGACTTGGGCAGCCTGCTTCATTCAAGCTGCTTGGAGAAGGTACAAGAAGAAGAAACTAGCGGCAAGCCTTAGTTTAAAGGAATATCAGTCATTTACTTATGATGAACAGATTAATAATGTAATGAGACATGAAGAGGAGAAACTTAGTGCTATGAATTCGAGTGCAAATTCATTAGGTGTCACTATACTTGCCTCAAGATTTGCTGCAAACGCAAGAAGAGGAGCTCAGAGGATTAAGGATCTTGAGATGCCTAAGTTTCAAAAGCCTCAAGATCCAGACTTCTCAGTGGAAGCAGAGGATGATTAG 1620 0.4117 MYHRVQGFLEGIMIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERNSTCWKSQCKNETFPMKCVLQYLDCSTLNDDDRMKWVNNTSVFDNCNPNNDISFKYGIFGPAVENNVVSSQFVEKYLYCLWWGLQNLSSYGQNLSTSTFIWETTFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPQNLRERVRRFVQYKWLATRGVDEEAILRGLPLDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSCLNIQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPSDFCGEELLAWALLPKSTSNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKKKLAASLSLKEYQSFTYDEQINNVMRHEEEKLSAMNSSANSLGVTILASRFAANARRGAQRIKDLEMPKFQKPQDPDFSVEAEDD 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3563g00054 539 SMART cnmp_10 302 433 IPR000595 -
Pral3563g00054 539 FunFam Cyclic nucleotide-gated ion channel 1 229 293 - -
Pral3563g00054 539 SUPERFAMILY cAMP-binding domain-like 232 424 IPR018490 -
Pral3563g00054 539 Gene3D - 8 228 - -
Pral3563g00054 539 ProSiteProfiles cAMP/cGMP binding motif profile. 302 386 IPR000595 -
Pral3563g00054 539 Gene3D Helix hairpin bin 229 293 - -
Pral3563g00054 539 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 14 532 - -
Pral3563g00054 539 FunFam Cyclic nucleotide-gated ion channel 1 300 418 - -
Pral3563g00054 539 Pfam Cyclic nucleotide-binding domain 326 413 IPR000595 -
Pral3563g00054 539 CDD CAP_ED 302 433 IPR000595 -
Pral3563g00054 539 SUPERFAMILY Voltage-gated potassium channels 23 224 - -
Pral3563g00054 539 Pfam Ion transport protein 25 229 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral3563g00054 539 Gene3D Jelly Rolls 300 420 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3563g00054 Pral-Chr3563 187146 189905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3563g00054 9 535 Ion Channels AT2G24610 74.583 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3563g00054 K05391 - gmx:100803334 935.636